Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq36344 136 6e-27 seq144 122 1e-22 seq31860 120 4e-22 seq3660 116 5e-21 seq25532 109 8e-19 seq1270 98.7 1e-15 >seq36344 Length=11671 Score = 136 bits (150), Expect = 6e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| | || || ||||||||||||||||||||||| ||||||||| || Sbjct 676 ATGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCA 735 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 736 GACACAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGACCAA 795 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | ||||||| ||| || ||||| |||||||| Sbjct 796 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGA 830 >seq144 Length=14776 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| || ||||| || || |||||||| |||| ||| Sbjct 10547 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACTTTAGAAGTTGAAGGGTCT 10606 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| ||| ||| | |||| || || |||||||| ||||| || || ||||| ||| Sbjct 10607 GATTCCATTGAAAATATTAAAACCAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAA 10666 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || ||||| | |||||| || |||| ||||| ||| Sbjct 10667 CAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACATACCCTATCCGATTACAAT 10726 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| ||||||| || || || || | || ||||| || Sbjct 10727 ATTCAAAAAGAATCGACGCTACACTTGGTCCTACGCTTGAGAGGTGG 10773 Score = 120 bits (132), Expect = 4e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| ||||||||||||| |||||||| || || || |||||||| || Sbjct 13542 ATGCAGATTTTTGTTAAAACATTGACAGGAAAAACCATCACTTTGGAAGTCGAGCCCTCG 13601 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| |||||| || || || ||||| |||||||| || |||||||| ||| Sbjct 13602 GATACTATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 13661 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | |||| || || ||||| | |||||| | || || ||||| || || Sbjct 13662 CAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGTACCTTGTCAGACTACAAC 13721 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| |||| | ||||| || Sbjct 13722 AT-TCAAAAGGAGTCGACATTGCATTTGGT 13750 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| || |||||||| || || || ||| Sbjct 12974 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACATTGGAGGTTGAGCCTTCC 13033 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| || || |||||||| ||||| || || ||||| || Sbjct 13034 GACACCATTGAAAACGTTAAAGCCAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAG 13093 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || || || | |||||| | || | ||||||||||| Sbjct 13094 CAACGTTTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACCCTGTCAGATTATAAC 13153 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| |||| | ||||| || Sbjct 13154 ATTCAGAAAGAGTCGACATTGCATTTGGT 13182 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||||||||| || ||||| || || |||||||| |||| |||| Sbjct 7702 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACCTTAGAAGTTGAAGGTTCT 7643 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| ||| || || || || || |||||||| ||||| || |||||||| ||| Sbjct 7642 GATTCCATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAA 7583 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 ||| | | |||| || || ||||| | ||||| Sbjct 7582 CAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGA 7548 Score = 96.9 bits (106), Expect = 5e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || ||||||||||| ||||| || || || |||||||| || Sbjct 13770 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 13829 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || || || || ||||| ||||| || || ||||| ||| Sbjct 13830 GATACCATCGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGTATCCCACCAGATCAA 13889 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||||| || || || || | |||||| | | ||||| || || || | Sbjct 13890 CAGCGTTTGATTTTCGCAGGAAAACAATTAGAAGATGGCCGTACTTTGTCTGACTACA-- 13947 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 ||||||||| ||| |||| | ||||| || Sbjct 13948 ATATCCAAAAGGAGTCGACATTGCATTTGGT 13978 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| ||||| | || ||||||||||| || || || || || || ||||| ||| Sbjct 12746 ATGCAGATATTCGTCAAGACATTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATCT 12805 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||| || ||| || || ||||| ||||| || || ||||| || Sbjct 12806 GATACGATCGAGAACGTAAAGGCTAAGATCCAGGATAAGGAAGGTATTCCACCAGACCAG 12865 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||| | ||||| | || || || || || ||| Sbjct 12866 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGACGTACCTTGTCCGACTACAAT 12925 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| | || | ||||| || Sbjct 12926 ATTCAGAAAGAGTCTACATTGCATTTGGT 12954 >seq31860 Length=14314 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||||||||| |||||||| | || |||||||| || ||| | |||| || | || Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 ||| |||| ||| || ||| || || || |||||||||||||| || ||||| || Sbjct 1122 GATTCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAG 1181 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAAC-TTTATCAGATTATAA 156001 ||||||||||||| ||| || || || | |||||| || ||| ||| | || || || Sbjct 1182 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGC-GACTACAA 1240 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || |||||| | || | ||||| || ||||||| | ||||| Sbjct 1241 CATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATTGCGCGGCGG 1288 >seq3660 Length=14069 Score = 116 bits (128), Expect = 5e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || ||||||||||| || || ||||| ||||| |||| ||| Sbjct 2291 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTGGAAGTTGAAGCTTCG 2350 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || || ||| || ||||| || ||||| || || ||||| ||| Sbjct 2351 GATACTATTGAAAATGTCAAGGCTAAGATTCAAGAGAAGGAAGGAATCCCACCAGATCAA 2410 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTT 155989 ||| | ||||||| ||| || || || | |||||| |||||| || Sbjct 2411 CAACGCTTGATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACATT 2457 >seq25532 Length=5913 Score = 109 bits (120), Expect = 8e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || ||||||||||||| ||||| || || || | ||||| || | | Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||| || |||||||||||||| || ||||| ||| Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || || | ||||| | || || || ||||| ||| Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATT 156040 || |||||| | || | || || || | ||||| Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATT 927 >seq1270 Length=21014 Score = 98.7 bits (108), Expect = 1e-15 Identities = 288/436 (66%), Gaps = 7/436 (2%) Strand=Plus/Minus Query 17870 TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATA 17929 ||||| |||||||| || ||||||||||| ||||| ||||| | ||| || | | ||| Sbjct 10753 TATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGATTCCATG 10694 Query 17930 AAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT-AATAATCT 17988 |||| |||||||| | || || ||| | | | | ||||| ||| |||| ||| Sbjct 10693 AAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTC-TATCAATAGTCT 10635 Query 17989 ATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAA 18048 || || || ||||| | ||||| |||||| | | ||||||||| || || | | | || Sbjct 10634 GTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCA-TATCAA 10576 Query 18049 -AGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTA 18107 |||| ||||| | | ||||| | || || ||||||| || || || | | Sbjct 10575 CTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAATTTCGA 10516 Query 18108 TTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAAT 18167 | | || ||||| ||| | | || || | || ||| | || ||||| | Sbjct 10515 TGATTCTTTCTTTTGTTGGTTTCTGGACTAAGT-AACGGAACATA--AGGCAGGCAAAGT 10459 Query 18168 CAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTA 18227 | |||||| |||||||| | || || | |||||| || || | || ||||| | Sbjct 10458 CGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCATAA 10399 Query 18228 TACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAA 18287 || | ||| || ||||| || || || || ||||| | ||||| || || || | Sbjct 10398 GGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTCGA 10339 Query 18288 CGCACGCGAACGCTAT 18303 || || || ||||| Sbjct 10338 CGGCAGCAAATGCTAT 10323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731133202661200