Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq144 145 2e-29 seq36344 123 5e-23 seq31860 123 5e-23 seq25532 120 6e-22 seq1270 107 4e-18 seq3660 104 5e-17 >seq144 Length=14776 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | |||| || || |||| || | ||||| ||||| ||||| || Sbjct 10774 ACCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGA 10715 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| |||||||| || ||||| || || | | |||||||| ||||| Sbjct 10714 TAGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGG 10655 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| |||||||| || || |||| | ||| || ||||| ||| ||| || Sbjct 10654 GATTCCTTCCTTATCTTGAATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAAC 10595 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||| ||||||||||| || |||||||| | ||| || ||||| Sbjct 10594 TTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| ||||||| |||||| || || || ||| Sbjct 13543 ATACCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCA 13484 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| |||| ||||||||||| ||||| || || || | ||| ||||| || Sbjct 13483 GACAAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGA 13424 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || ||| ||| || || |||| ||| || | ||| Sbjct 13423 GGAATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCG 13364 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || ||||| || ||||| ||||| | || || ||||| Sbjct 13363 ACTTCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||| | || ||||| || |||| |||||| ||||| || || Sbjct 12975 ATGCCTCCACGAAGACGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCG 12916 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || ||||| || || ||||||||||| || | ||| || || ||| Sbjct 12915 GACAAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGT 12856 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| ||||| || || ||| ||||| || || | ||| || | || Sbjct 12855 GGAATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCG 12796 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | ||| ||||| |||||||| ||||| || | |||||||||||| Sbjct 12795 ACCTCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACGAATATCTGCATT 12745 Score = 116 bits (128), Expect = 7e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATC 192365 |||||||| | ||||| | || ||||| || || | ||| ||| || ||||| || || Sbjct 14683 ATACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGA-ATATTGTAGTC 14625 Query 192366 AGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 || || || || |||| |||||||||||||| || || || || | ||| ||||| || Sbjct 14624 GGACAAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGG 14565 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || || |||||||| || || || || || || || || | |||||| | || Sbjct 14564 AGGAATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTC 14505 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || || ||||| ||||| || ||||||| || |||||||| Sbjct 14504 AACTTCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 113 bits (124), Expect = 9e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||||| || ||| | || |||||||| || ||||| || || | | Sbjct 7521 ATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAAATGAGGCGT 7580 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 |||||||| || || |||||||| |||||||| || || || ||||| || ||| Sbjct 7581 TGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACATTCTCAATGGAA 7640 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| ||||||| || ||||||||||| || |||||||| | ||| || ||| Sbjct 7641 TCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGC 7700 Query 192535 AT 192536 || Sbjct 7701 AT 7702 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || ||||| || || | |||||| || |||||||| Sbjct 13203 ATACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCT 13144 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| ||||||||||| ||||||||||| || | || ||||| || Sbjct 13143 GACAGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGG 13084 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || ||| || || || | || || | || Sbjct 13083 GGGATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCA 13024 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | |||||||| || ||||| || || || | || || ||||| Sbjct 13023 ACCTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 >seq36344 Length=11671 Score = 123 bits (136), Expect = 5e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || ||||| || || | || || ||| || || || || Sbjct 903 ACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGA 844 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| | || || | ||| || |||||||| || || | ||||| || || || Sbjct 843 CAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 784 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 ||||||||||| ||||| |||||| ||||||||| || | ||||||| ||| || Sbjct 783 GATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGAC 724 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||||| ||||| ||||| || || || | ||||| ||||| Sbjct 723 TTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 >seq31860 Length=14314 Score = 123 bits (136), Expect = 5e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAA-TGTTCGTTCATCATC 192386 || ||||| || || | |||||| || || || || | ||| |||| |||| || Sbjct 1270 ACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTC-GCTAAGTGTTTTGCCATCTTC 1212 Query 192387 CAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTG 192446 ||||||||| |||||||| || ||||| || ||||| ||||| || ||||||||||| || Sbjct 1211 CAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTATCCTG 1152 Query 192447 TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTT 192506 || || ||| ||||| ||||||||||| || |||| || || || ||||| Sbjct 1151 AATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATTGTTTT 1092 Query 192507 ACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||| |||||||| ||||| ||||| Sbjct 1091 TCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq25532 Length=5913 Score = 120 bits (132), Expect = 6e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || || || || |||| |||||| |||||| |||||| ||||| | | || ||| Sbjct 936 ACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTCC 995 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 |||||||| |||||||| || ||||| |||||||| ||||| || ||||||||||| || Sbjct 996 AATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATCCTGA 1055 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 |||||| || ||| | || | || | | || ||||| || || || || || Sbjct 1056 ATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCTTT 1115 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||||| || || ||||| Sbjct 1116 CCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq1270 Length=21014 Score = 107 bits (118), Expect = 4e-18 Identities = 308/469 (66%), Gaps = 11/469 (2%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 |||||| ||| || | | ||| |||| ||||||||||| || || ||| | | | Sbjct 10716 CTTCTAGTGAAATAGATTCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGA 10657 Query 49633 CTATCAATACATAT-AATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 || |||| | ||| |||| ||| || || || ||||||| ||||| |||||| | || Sbjct 10656 CTCCCAATTC-TATCAATAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTG 10598 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 |||||||| || | | | || |||||| ||||| | ||||| | ||| ||||| Sbjct 10597 CAATTCATGCCAAGCATATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCA 10538 Query 49752 acagctt---gtttaattatcataattatattattttttgataatttatatttaatatga 49808 ||||||| | ||||| || ||| | | ||| ||| | | | | || | Sbjct 10537 ACAGCTTCACGGATAATTTCGATGATTCTTTCTTTTGTTG-----GTTTCTGGACTAAGT 10483 Query 49809 ttcgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCA 49868 || | | || | || ||||| || ||||| || || || | ||| || | ||| Sbjct 10482 AACGGA-ACATAAGGCAGGCAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCG 10424 Query 49869 TTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAA 49928 || || || | || ||||| | || | || |||||||| || || || |||||| Sbjct 10423 TTTGAGAATGTCAGACCAGGCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAA 10364 Query 49929 CTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATT 49988 || | ||||| || || ||||| ||||||||||| || | | |||| | | Sbjct 10363 CTTCCGCTGAAGAAAATTCCTTCGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTG 10304 Query 49989 AATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGA 50037 || | | ||||||| | ||||||||||| || || ||||||| Sbjct 10303 GCGTTCTGACTGCATATCCATTGAATAGCCCAATCGGCCTTCTTTTTGA 10255 >seq3660 Length=14069 Score = 104 bits (114), Expect = 5e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCG 192377 ||||| | || ||||| || || | || ||| || || || || || ||||||| Sbjct 2508 AGACGGAGGACCAAATGCAATGTCGATTCCTTTTGA-ATGTTGTAGTCGCCCAATGTTCT 2450 Query 192378 TTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTC 192437 |||| ||||||||||| |||||||| || || | |||||||| ||||| |||||||| Sbjct 2449 GCCATCTTCCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTC 2390 Query 192438 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGT 192497 || ||||| || ||| || ||||| |||| ||| || | ||| ||||| | || Sbjct 2389 CTTCTCTTGAATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGT 2330 Query 192498 AATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| || || || | || || ||||| Sbjct 2329 GATTGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983461359466950