Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq144 140 6e-28 seq36344 132 9e-26 seq31860 118 2e-21 seq25532 116 7e-21 seq1270 113 8e-20 seq3660 104 4e-17 >seq144 Length=14776 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| ||||||| |||||| ||| || || || Sbjct 13543 ATACCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCA 13484 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| ||| | || ||||||||||| ||||| ||||| || | ||| || || || Sbjct 13483 GACAAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGA 13424 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| ||||| || ||| ||| || || |||||||| || | ||| Sbjct 13423 GGAATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCG 13364 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || ||||| || ||||| ||||| | ||| || ||||| Sbjct 13363 ACTTCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || | || ||||| || |||| |||||| |||||| || || Sbjct 12975 ATGCCTCCACGAAGACGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCG 12916 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| ||||| || || |||||||| || || | ||| ||||| ||| Sbjct 12915 GACAAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGT 12856 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || ||| ||||| || || ||||| || | || Sbjct 12855 GGAATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCG 12796 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || | ||| ||||| |||||||| ||||| || | ||||||||||||| Sbjct 12795 ACCTCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACGAATATCTGCATT 12745 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||||||||| | |||| || || |||| || | ||||| |||||| ||||| || Sbjct 10774 ACCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGA 10715 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | || | || |||||||| || ||||| ||||| | | ||||| || ||||| Sbjct 10714 TAGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGG 10655 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| |||||||| || || |||| | ||| || | ||| ||| ||| || Sbjct 10654 GATTCCTTCCTTATCTTGAATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAAC 10595 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||| ||||||||||| || |||||||| | || || ||||| Sbjct 10594 TTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| || || | ||| || |||||| || || Sbjct 14683 ATACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCG 14624 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || |||||||||||||| || ||||| || | ||| || || || Sbjct 14623 GACAAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGA 14564 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||| || || || || || || || || |||||||| | || Sbjct 14563 GGAATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCA 14504 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || || ||||| ||||| || ||||||| ||| |||||||| Sbjct 14503 ACTTCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || ||||| || || | |||||| ||| ||||||||| Sbjct 13203 ATACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCT 13144 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || ||||||||||| |||||||| || || | || || || || Sbjct 13143 GACAGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGG 13084 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || ||| || || || || || || | || Sbjct 13083 GGGATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCA 13024 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||| || ||||| || || || | ||| || ||||| Sbjct 13023 ACCTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 171879 TCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAA 171938 ||||| ||| || || || |||| | ||| |||| |||||||| || ||||| ||| Sbjct 7512 TCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAA 7571 Query 171939 ATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 171998 || | | ||||| || || || |||||||| |||||||| || || || ||||| Sbjct 7572 ATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTAACATTC 7631 Query 171999 GTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATG 172058 || | ||| || ||| ||||||| || ||||||||||| || |||||||| | Sbjct 7632 TCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGACA 7691 Query 172059 AATATCTGCAT 172069 || || ||||| Sbjct 7692 AAGATTTGCAT 7702 >seq36344 Length=11671 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || ||||| || || | || || || || || || || Sbjct 903 ACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGA 844 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | ||| |||| || | ||| || ||||||||||| || | |||||||| || || Sbjct 843 CAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 784 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 ||||||||||| ||||| |||||| ||||||||| || || ||||||| ||| || Sbjct 783 GATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGAC 724 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| | ||||| ||||| ||||| || || || | |||||| ||||| Sbjct 723 TTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 >seq31860 Length=14314 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| ||||||||||| ||||| || || || ||||| || ||||||||| Sbjct 1216 TCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTA 1157 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || ||| ||||| |||| |||||| || |||| || || || Sbjct 1156 TCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATT 1097 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || |||| |||||||||||||| ||||| Sbjct 1096 GTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq25532 Length=5913 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 || || || || |||| |||||| ||||| ||||| || | | |||| ||| Sbjct 936 ACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTCC 995 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 |||||||| ||||||||||| ||||| ||||| || ||||| || ||||||||||| || Sbjct 996 AATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATCCTGA 1055 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 |||||| || ||| | || || || | | || ||||| || || || || || Sbjct 1056 ATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCTTT 1115 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||||| ||| || ||||| Sbjct 1116 CCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq1270 Length=21014 Score = 113 bits (124), Expect = 8e-20 Identities = 326/497 (66%), Gaps = 11/497 (2%) Strand=Plus/Minus Query 38847 ACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAATTCATAAAATCAAAT 38906 ||||| |||||||| || || || || ||||||| ||| || | | ||| |||| ||| Sbjct 10744 ACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGATTCCATGAAATTGAAT 10685 Query 38907 GGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-AATAATCTATCGGCCAC 38965 |||||||| || || ||| | | | || |||| | ||| |||| ||| || || || Sbjct 10684 GGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTC-TATCAATAGTCTGTCAGCAAC 10626 Query 38966 AAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAATTTAAATGGTAATGC 39025 ||||||| ||||| | |||| | || |||||||| || | | | || |||||| || Sbjct 10625 GAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCATATCAACTGGTAAGGC 10566 Query 39026 ATCATCAATAAATTCtttttctatttctacagctt---gtttaattatcataattatatt 39082 ||| | ||||| | ||| ||||| ||||||| | ||||| || ||| | | Sbjct 10565 ATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAATTTCGATGATTCTTTC 10506 Query 39083 attttttgataatttatatttaatatgattcgcatataGTAAACATGCAAAATCCGTATG 39142 ||| ||| | | | | || | || | | | | || ||||| || || Sbjct 10505 TTTTGTTG-----GTTTCTGGACTAAGTAACGGA-ACATAAGGCAGGCAAAGTCGCAGTG 10452 Query 39143 TAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCT 39202 ||| ||||| || | ||| || | ||| || || || | || ||||| | || | Sbjct 10451 TAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCATAAGGCCACG 10392 Query 39203 CTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGC 39262 || |||||||| || || || |||||||| | ||||| || || || || || Sbjct 10391 TTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTTCGACGGCAGC 10332 Query 39263 AAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCCAATTTATGGCCCA 39322 ||||||||| || | | |||| | | || | | | ||||| | || ||||| Sbjct 10331 AAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCATTGAATAGCCCA 10272 Query 39323 ATCTGCtttttttttGA 39339 ||| || || ||||||| Sbjct 10271 ATCGGCCTTCTTTTTGA 10255 >seq3660 Length=14069 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || ||||||||||| ||||||||||| || | ||||| || ||||| |||||||| || Sbjct 2445 TCTTCCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGGGATTCCTTCCTTC 2386 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| || ||| || ||||| |||||||| || | ||| ||||| | || || Sbjct 2385 TCTTGAATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATGTGATT 2326 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || || | ||| || ||||| Sbjct 2325 GTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904222299150600