Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq71022 140 1e-27 seq33293 138 3e-27 seq1671 100 8e-16 >seq71022 Length=3779 Score = 140 bits (154), Expect = 1e-27 Identities = 722/1140 (63%), Gaps = 19/1140 (2%) Strand=Plus/Plus Query 155396 GAAAAATGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCT 155455 || ||||| || || | |||||||| ||||| || | || ||||| || ||| Sbjct 1493 GATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGATGTCTCATATTCGA 1552 Query 155456 CCTGCTTGTCTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTTGTAA 155514 | || | ||||| | | || ||||| || |||||||| || ||||| |||||| | Sbjct 1553 TGTTCTAG-CTTCTGGGATCGGATAAAAGTTGACATCAATGATTTTATTCAAATTTTT-- 1609 Query 155515 CCAATACC---TTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTA 155571 | ||| || || || ||| |||||| | ||||| ||||| || | | | | Sbjct 1610 -CGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAACGTTTTTTCATTAGTAA 1668 Query 155572 CAAACATAC-CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCT-TGTCGTCGCT 155629 |||||||| |||| | ||| || |||| |||||| || ||| || | | | | | Sbjct 1669 CAAACATATTCAAGGC-AATTGAGGCCAAATTACAGACGGCAACTTCATCTTTACTTGAA 1727 Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||||| |||||||| |||| ||| | || ||||| || | ||| | ||||| Sbjct 1728 -TATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAATATTTTGTTGGTT 1786 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 |||||| ||||||||||| || ||||| || || || || || || || || | || | Sbjct 1787 AGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCCGTTTCAACTTGAGA 1846 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || | ||| | ||||||||| | || ||||| || | | | ||||| Sbjct 1847 TTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAATAAAACGACCTTCTTT 1906 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 ||||||| | |||| || | |||||||| | || || |||||||| Sbjct 1907 TTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTCGTGTAGACCAGGGCA 1966 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATT--ACACGCTCCATAAATACA 155927 || || ||||| | || ||| |||| |||| || | || | | |||||| | | Sbjct 1967 CTCATGAGGGCACATCAAACTCCACATTTCATTA--GACTCGACCCTTTGCATAAACAAA 2024 Query 155928 TCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTC 155987 || ||||| || | || | || | ||| || || || | ||| ||| Sbjct 2025 TCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTCCTTGCCCGTATTT 2084 Query 155988 TTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA 156047 ||| | |||| ||| || || || || || || ||||| || |||||| Sbjct 2085 TTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAGATAAATGGCAAAA 2144 Query 156048 CTACCA---TTCCTCTTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCT 156104 ||| || | || |||||||| || || || ||||| || || ||| | || | Sbjct 2145 GCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATTGTTGTACACTCGC 2204 Query 156105 AGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAG 156164 | ||| || | | ||||| ||| |||| || || ||| |||| | || | Sbjct 2205 AACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATAAGTTCCCTTGGCC 2264 Query 156165 CGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCC 156224 |||| | |||| || ||| ||||| || |||| ||||||| | | | || || | | Sbjct 2265 CGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATACTAGCGCACACTGC 2324 Query 156225 TTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAA 156284 || | |||| | |||| || |||||| |||||| ||| | | || |||| || Sbjct 2325 TTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAATAAGAAGCAAGAT 2384 Query 156285 CTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATAC 156344 || ||||| || || || | || || | |||||| | |||||| | ||||| Sbjct 2385 GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACGCATGAGTGAAATAA 2444 Query 156345 TTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAG 156404 | ||||| | || ||||| | |||| | ||| ||||| | Sbjct 2445 CGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCTCCCCATGAATGCCT 2504 Query 156405 ATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGA 156464 | || || |||||| |||||||||| |||||||| |||| || | ||| || Sbjct 2505 ACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCCCCTTAATCTTCAAC 2564 Query 156465 AGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAA 156524 | || | ||||||| ||||| || |||||||||| | ||||||||| | |||| Sbjct 2565 AAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAAAATCACGATCGTAA 2624 >seq33293 Length=3956 Score = 138 bits (152), Expect = 3e-27 Identities = 319/473 (67%), Gaps = 21/473 (4%) Strand=Plus/Minus Query 288901 TTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA 288960 ||||||||| |||| |||| || | |||| |||| | ||| || ||||| || ||| Sbjct 2534 TTTGTTGCTCCCAAGACAATAACACCTTCGTTTTGTTGAAACCCGTCCAT--TTCGGAAA 2477 Query 288961 --ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGC 289018 | |||||| | |||||| | | ||| | || || | ||| |||| Sbjct 2476 GCAATTGATTGATTGTTTGAT---TGGCATAAG--GA------TGTAGGACC-GAATTTG 2429 Query 289019 TCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTC 289078 | ||||| ||||| | |||||||| || || ||||| ||||| |||| | | | Sbjct 2428 TTCTTTTAGCTCCAACTGAGTCAATTTCATCGATAAAAATTACACATGGAGCACGATCTT 2369 Query 289079 TCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAA 289138 | ||| | ||| || |||| ||||| |||||| ||||||| | | ||| ||| Sbjct 2368 TTGCAGCTTTAAACAAATCTCGAACACGCCTTGCTCCCTGACCAACCAAAACTTCATCAA 2309 Query 289139 ATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCA 289198 |||||| | | | |||| |||| || ||||| || || |||||||| |||| Sbjct 2308 ATTCAGGGCCAGCAGCATGAAAAAATGGCACTCCAGCTTCACCGGCCACTGCCCTTGCCA 2249 Query 289199 GAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCC 289258 ||| ||||| || |||||||||||||| |||| | || || ||||| | |||| | | Sbjct 2248 AAAGGGTCTTTCCGGTTCCAGGTGGTCCTACTAACAAGACACCTTTTGGCAGTTTTCCTC 2189 Query 289259 CAGCAGACTT--ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATA 289316 | | | || | | || || || | |||| ||||| |||| ||| | |||||| | Sbjct 2188 C--TAAATTTGAAAACTTGTCTGGATTTTTTAGGAATTCGACAACTTCTTTAAGTTCTTG 2131 Query 289317 TTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAATATTAATATCGTTCT 289369 ||| || || ||||||||| ||||| | || || | ||| ||||| |||| Sbjct 2130 TTTGGCTTCGTCACATCCTTTGACATCTTCGAAGGTTACATTTATATC-TTCT 2079 >seq1671 Length=18251 Score = 100 bits (110), Expect = 8e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||| ||||||||||| || || || | | || |||| || || ||| || ||||| Sbjct 9816 ACCAACGGCATCAATTTCATCGATAAACAAAATGCAAGGAGCATGTTTTCTGGCCATTGC 9757 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| | |||| || | || | |||| ||| ||| ||||||| | ||| || ||| | Sbjct 9756 AAACATGTCTCGAACTCTTGAAGGCCCAACACCGACAAACATTTCCAAAAACTCTGAACC 9697 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || ||| ||||| | ||||| || ||||| ||| ||| | |||| || || || Sbjct 9696 TGACACTGTGATGAAAGGCACATTAGCCTCGCCAGCTGTTGCTTTGGCCAATAGCGTTTT 9637 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| ||||| ||||| || Sbjct 9636 ACCAGTTCCGGGTGGACC 9619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470294711709109