Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1700 125 6e-24 seq31860 118 9e-22 seq25532 100 2e-16 seq3660 93.3 3e-14 seq144 89.7 4e-13 >seq1700 Length=6496 Score = 125 bits (138), Expect = 6e-24 Identities = 258/382 (68%), Gaps = 4/382 (1%) Strand=Plus/Plus Query 34264 CCGCATGCTTTGCAGCCCTGACAGATAATGTTC--TTTTTAGCGGACACGATGAGCTCAG 34321 || ||||||||||| || || ||||| |||| ||||| | || || | | || | Sbjct 3216 CCACATGCTTTGCATCCTTG--AGATATAGTTCCTTTTTTTGACGATACTAGCAATTCTG 3273 Query 34322 TCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGT 34381 | || || || ||||| || ||||| | ||||| || | || |||||||| | | | Sbjct 3274 TTTCAGGATTATCACACTCGGGACATAGAACAAATTTTCTTATAAAACCATCTAATAAAT 3333 Query 34382 CCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAATCGA 34441 |||||| |||| | || || || || || || || |||||||| ||||| ||||| | Sbjct 3334 CCTGTAGCTTAGATGCATCATGTGAACCATTCACAATAAATCGTTCATTTTTATAATCAA 3393 Query 34442 CCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTC 34501 || ||||| || |||| || || || || ||||| || || ||| | || || | | Sbjct 3394 ATTGTGTTTGTGCTCCCAATTCACATCCAAAATACTTGGTTGGATAAGTTGCTGGTCTAC 3453 Query 34502 CAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTC 34561 | | || || | || | ||| ||||| || || || || ||||| || || || | Sbjct 3454 CGATTGCACGTGCTACATCAGCCATATTGACTATCACTGTTTTAATGCCATTTCCTTTAC 3513 Query 34562 CTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGC 34621 |||| || || || || |||||||| || |||||||| || | ||||| | Sbjct 3514 CTTCTACTTTAGCATTAATCTTTGGCATTTTATATCGGTAGAATATATCAGTAACATTCC 3573 Query 34622 GGTTAACGTTCACAGTCCCCAT 34643 || || || | ||| ||||| Sbjct 3574 TATTTACATTTAAAGTACCCAT 3595 >seq31860 Length=14314 Score = 118 bits (130), Expect = 9e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||||||||| | ||||| ||||||| ||||| || || | ||| | ||| || | Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | || ||| ||||||| || ||||||||| | || ||||| Sbjct 1122 -GATTCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCA 1180 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | |||| ||| || ||||| |||| |||| || |||| | || ||||| Sbjct 1181 GCAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTACAA 1240 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGA 110500 |||||||||||| || || ||||| |||| ||||| |||| || ||| Sbjct 1241 CATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATTGCGCGGCGGA 1289 >seq25532 Length=5913 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| || || || || || || || | ||| ||| | | | Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | || || || ||| || ||||||||| | || |||||| Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| || ||||| |||| || || || ||| ||| |||||||| Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAA 110505 || || ||||| ||||| |||||| |||| | ||| |||| || ||| |||| Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGGACAAAA 912 >seq3660 Length=14069 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||| ||||| || || || || || || | ||| || || Sbjct 2291 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTGGAAGTTGAAGCTTCG 2350 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || || |||||| || || ||||| | || |||||| Sbjct 2351 GATACTATTGAAAATGTCAAGGCTAAGATTCAAGAGAAGGAAGGAATCCCACCAGATCAA 2410 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| || ||||| |||| |||| ||||||| ||| || |||||| Sbjct 2411 CAACGCTTGATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACATTGGGCGACTACAAC 2470 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| ||||| || ||||| |||| Sbjct 2471 ATTCAAAAGGAATCGACATTGCATTTGGT 2499 >seq144 Length=14776 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| |||||||| ||||| || || | ||| || ||| Sbjct 13314 ATGCAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCG 13373 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| ||||| ||||||||||| | || ||||| Sbjct 13374 GATACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 13433 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| || || ||||| |||| |||| | || || | || |||||| Sbjct 13434 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAAC 13493 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| ||||| ||||| |||| Sbjct 13494 ATTCAGAAAGAGTCTACTTTGCATTTGGT 13522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || ||||| ||||| ||||||||||| ||| | ||| ||||| Sbjct 13998 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14057 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | ||||| || ||| || || |||||| | || |||||| Sbjct 14058 GATACCATTGAAAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATCCCTCCAGATCAA 14117 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| || || || || |||| |||| | | ||| || | || ||||| Sbjct 14118 CAGCGTTTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCTGACTACAAT 14177 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || |||||||| || || ||||| |||| Sbjct 14178 ATCCAAAAAGAGTCGACATTGCATTTGGT 14206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412435270589201