Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq31860 114 1e-20 seq25532 105 5e-18 seq3660 84.2 2e-11 seq144 84.2 2e-11 >seq31860 Length=14314 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || | ||||| |||| || ||||| || || | ||| | |||| Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||| || | | | || ||| |||||| |||||||||||| | || |||||| Sbjct 1122 GATTCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAG 1181 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| || ||||| |||| || | ||||||| | ||||||||| Sbjct 1182 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTACAAC 1241 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 |||||||| ||||| || ||||| |||| | |||||||| || ||| Sbjct 1242 ATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATTGCGCGGCGGA 1289 >seq25532 Length=5913 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || ||||| || ||||| || || || || | ||| ||||| | | Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | || || || ||| |||||||||||| | || ||||| Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| || ||||| |||| ||||| | ||| ||| || ||||| Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || || || |||||||| |||||| |||| | |||||||| || ||| Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGGA 917 >seq3660 Length=14069 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || ||||| ||||| || || || || || || | ||| || ||| Sbjct 2291 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTGGAAGTTGAAGCTTCG 2350 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || || |||||| || || ||||| | || ||||| Sbjct 2351 GATACTATTGAAAATGTCAAGGCTAAGATTCAAGAGAAGGAAGGAATCCCACCAGATCAA 2410 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | | |||| ||| || ||||| |||| || | || |||| ||| ||||||||| Sbjct 2411 CAACGCTTGATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACATTGGGCGACTACAAC 2470 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||| || || ||||| |||| Sbjct 2471 ATTCAAAAGGAATCGACATTGCATTTGGT 2499 >seq144 Length=14776 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| |||||||| ||||| || ||||| || || | ||| || || Sbjct 13314 ATGCAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCG 13373 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| ||||| || |||||||| | || |||||| Sbjct 13374 GATACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 13433 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| || || ||||| |||| || | || || | ||||||||| Sbjct 13434 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAAC 13493 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || |||||||| ||||| |||| Sbjct 13494 ATTCAGAAAGAGTCTACTTTGCATTTGGT 13522 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || ||||| ||||| ||||||||||| ||| | ||| ||| | Sbjct 14226 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14285 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || ||| || ||| ||||| ||||| | || ||||| Sbjct 14286 GACACAATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCAGATCAA 14345 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| ||| || ||||| | || || | | ||| || | |||||||| Sbjct 14346 CAGCGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACTACAAT 14405 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 || ||||||||||| || ||||| |||| Sbjct 14406 ATCCAAAAGGAGTCGACATTGCATTTGGT 14434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || |||||||| || |||||||| || ||| | ||| ||| | Sbjct 14454 ATGCAGATTTTCGTTAAAACTTTGACTGGCAAAACTATCACCTTGGAAGTTGAGCCCTCA 14513 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || || ||||| || |||||||| | || |||||| Sbjct 14514 GATACCATTGAAAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGATCAG 14573 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| || |||||||| |||| || | | || || | |||||||| Sbjct 14574 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGATGGCCGCACTTTGTCCGACTACAAT 14633 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||||||||||| || ||||| |||| Sbjct 14634 ATTCAAAAGGAGTCGACATTGCATTTGGT 14662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398484215107573