Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq25532 129 9e-25 seq31860 125 1e-23 seq144 123 4e-23 seq36344 95.1 2e-14 >seq25532 Length=5913 Score = 129 bits (142), Expect = 9e-25 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | |||||||| |||||||| ||||| || |||| || || || Sbjct 1143 TGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCCG 1084 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||| ||| || |||||| || |||||||||||| ||||| ||||||| Sbjct 1083 ACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAAC 1024 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||||| || || ||| || || ||||| |||| Sbjct 1023 AAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAATA 964 Query 146212 TACAAAAAGAATCGAC 146227 | || ||||| || || Sbjct 963 TCCAGAAAGAGTCTAC 948 >seq31860 Length=14314 Score = 125 bits (138), Expect = 1e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||||| ||||| |||| ||||||||||| || |||| | || | Sbjct 1063 TGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCAG 1122 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || ||||| ||||||| ||| || || || |||||||||||| ||||| ||||| | Sbjct 1123 ATTCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAGC 1182 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || |||||||| || ||| | ||| | | || || || | Sbjct 1183 AAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTACAACA 1242 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATT 146248 | |||||||| || || | ||||| || || |||| Sbjct 1243 TTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATT 1279 >seq144 Length=14776 Score = 123 bits (136), Expect = 4e-23 Identities = 170/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | |||||||| || || ||||| || ||| | || || ||| | Sbjct 10548 TGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACTTTAGAAGTTGAAGGGTCTG 10607 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || | ||| ||||| | |||| || || ||| ||| ||||| || ||||| ||||||| Sbjct 10608 ATTCCATTGAAAATATTAAAACCAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAAC 10667 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || || || ||||| || ||| || || | ||||| |||| Sbjct 10668 AACGCCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACATACCCTATCCGATTACAATA 10727 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | |||||||||||||| | || || || |||| || ||||| ||| | |||| || Sbjct 10728 TTCAAAAAGAATCGACGCTACACTTGGTCCTACGCTTGAGAGGTGGTTTACAAATTTT 10785 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| ||||| || ||||| || || | || || || | | Sbjct 14227 TGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCGG 14286 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| ||| |||||| ||| ||| ||||| || || || ||||||| Sbjct 14287 ACACAATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCAGATCAAC 14346 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| || ||||||||||| ||| | || || |||| || |||| Sbjct 14347 AGCGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACTACAATA 14406 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||| || ||||| | ||||| ||| Sbjct 14407 TCCAAAAGGAGTCGACATTGCATTTGGTA 14435 Score = 109 bits (120), Expect = 9e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | |||||||| ||||||||||| || ||| | || || || | | Sbjct 13543 TGCAGATTTTTGTTAAAACATTGACAGGAAAAACCATCACTTTGGAAGTCGAGCCCTCGG 13602 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| |||| || || || || ||| |||||||| ||||| || ||||||| Sbjct 13603 ATACTATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAAC 13662 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | |||||||| || || || ||||| || ||| | || || |||| || || | Sbjct 13663 AACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGTACCTTGTCAGACTACAACA 13722 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||| || ||||| | ||||| || Sbjct 13723 TTCAAAAGGAGTCGACATTGCATTTGGT 13750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || ||||| || || ||||| || || | || || || | | Sbjct 13771 TGCAAATCTTCGTCAAGACATTGACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCGG 13830 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | || || || || || || ||| ||||| || ||||| ||||||| Sbjct 13831 ATACCATCGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGTATCCCACCAGATCAAC 13890 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||| ||||| ||||||||||| ||| | || || | || || |||| Sbjct 13891 AGCGTTTGATTTTCGCAGGAAAACAATTAGAAGATGGCCGTACTTTGTCTGACTACAATA 13950 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 | ||||| || ||||| | ||||| ||| Sbjct 13951 TCCAAAAGGAGTCGACATTGCATTTGGTA 13979 >seq36344 Length=11671 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || || || |||||||| ||||| | || || |||| | Sbjct 677 TGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCAG 736 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||||||| |||||| ||| |||||||| || || || || |||| Sbjct 737 ACACAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGACCAAC 796 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || || ||| | || || | || || | || || || | Sbjct 797 AACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTACAACA 856 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAAT 146266 | || || ||||| || | ||||| || | || | | || ||| ||||||| Sbjct 857 TCCAGAAGGAATCAACATTGCATTTGGTCCTCCGTCTCCGTGGTGGTCAATAAAT 911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785372794500440