Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq31860 132 4e-26 seq144 129 5e-25 seq36344 127 2e-24 seq25532 123 2e-23 seq3660 114 1e-20 >seq31860 Length=14314 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || | ||| | || |||||||| | ||||| |||||||||||||| || || Sbjct 1289 TCCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCT 1230 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| || | ||||||||||||| | ||||||||||||||||| || || Sbjct 1229 AAGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGG 1170 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||| || || | || ||||||| |||| | || || || || | Sbjct 1169 GATGCCTTCTTTATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGC 1110 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||| ||||| ||||| || |||| |||||||| ||||| ||||| Sbjct 1109 TTCAAGTGTTATTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 >seq144 Length=14776 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || || ||||| |||||||| || || | | || || Sbjct 13529 ACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCC 13470 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | ||||| | |||||||| || |||||||| ||||| Sbjct 13469 ATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTT 13410 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || ||| || |||| | ||| || ||| |||| ||||| | || || Sbjct 13409 GTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGAT 13350 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || ||||||||||| || || || ||||| Sbjct 13349 CGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 122 bits (134), Expect = 7e-23 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || |||||||| | || || || ||||| || || || || | ||||| | || Sbjct 14441 ACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATG-TACGGC 14383 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | ||||||||| ||| | ||||| | || ||||| || || ||||| || | Sbjct 14382 CATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCT 14323 Query 29690 TGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | ||||| |||||| | ||| ||| |||| | ||||| || | || ||||| | || Sbjct 14322 TATCTTG-AATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTG 14264 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||||||||||||||| || || || ||||| Sbjct 14263 ATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 118 bits (130), Expect = 8e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || || ||||| |||||||||||||| | | ||| || Sbjct 13189 ACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCC 13130 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| |||||| | ||||| | ||||||||| || || ||||| || || Sbjct 13129 ATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTT 13070 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 ||||| ||| || | ||| || |||| | ||||| ||| | || || || | || | Sbjct 13069 ATCTTG-AATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAA 13011 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || ||||| || || || || || || ||||| Sbjct 13010 TGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || || || ||||||||||| || || | | ||| || Sbjct 13757 ACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCC 13698 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| || ||||| | || | | ||| ||||| || |||||||| ||||| Sbjct 13697 ATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTT 13638 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || || |||| | ||| || || | || ||||| | ||| || Sbjct 13637 GTCTTGGATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGAT 13578 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||||||||| |||||||| Sbjct 13577 GGTTTTTCCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || || || |||||||| || || || | | ||||| Sbjct 14669 ACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCC 14610 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| || || | ||||| | |||||||| || |||||||| ||||| Sbjct 14609 ATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTT 14550 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || |||| | || || || | || ||||| | || || Sbjct 14549 GTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGAT 14490 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||||| || |||||||| || |||||||| Sbjct 14489 AGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || || ||||| || ||||| |||||||||||||| || ||||| | Sbjct 10773 CCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGAT 10714 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | ||| || ||||| | || | | ||| ||||| || || Sbjct 10713 AGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGGG 10654 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| ||| || | ||| | | |||| | | ||||| ||| || Sbjct 10653 ATTCCTTCCTTATCTTG-AATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAAC 10595 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | |||||| ||||| || || || ||||| ||||| || ||||| Sbjct 10594 TTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 109 bits (120), Expect = 4e-19 Identities = 158/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||| || |||||||| | || || |||||||| || || || || | ||||| |||| Sbjct 14213 ACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATG-TGCGGC 14155 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | ||| || ||||| | ||||| | || ||||| || || || || || | Sbjct 14154 CATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCT 14095 Query 29690 TGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 | ||||| |||||| | || ||| |||| | || || || | || ||||| | || Sbjct 14094 TATCTTG-AATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTG 14036 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||||||||||||||| || || || ||||| Sbjct 14035 ATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 29594 ATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCAT 29653 |||||||||||||||| || || | | ||| || || || | ||| || ||||| Sbjct 7510 ATTCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGA 7569 Query 29654 ATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACA 29712 | || | | ||| ||||| || ||||| || || || ||||| ||| || | || ||| Sbjct 7570 AAATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTG-AATCTTGGCCTTAACA 7628 Query 29713 GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTA 29772 | || | | |||||| ||| ||||| | ||||| ||||| || || || ||||| Sbjct 7629 TTCTCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTG 7688 Query 29773 ACAAATATCTGCAT 29786 ||||| || ||||| Sbjct 7689 ACAAAGATTTGCAT 7702 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| || |||||||| | || || ||||| ||||| || || || | Sbjct 12972 CCTCCACGAAGACGGAGAACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGAC 12913 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || || || | || || |||||| | ||||| | ||||| || || ||| Sbjct 12912 AAGGTACGTCCGTCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGA 12853 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| || || || || | || || || | || | || ||||| | || || Sbjct 12852 ATACCTTCCTTATCCTGGATCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACC 12793 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || || || ||||| || || || || |||||||||||| Sbjct 12792 TCCAAAGTGATGGTCTTACCAGTCAATGTCTTGACGAATATCTGCATT 12745 >seq36344 Length=11671 Score = 127 bits (140), Expect = 2e-24 Identities = 160/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || ||||| || || ||||| || || | | ||| || Sbjct 891 ACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCC 832 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || |||||||| ||||||||| | ||||| | ||| || || || || || || ||||| Sbjct 831 GTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTT 772 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | ||| ||| | || | ||||| || |||| ||||| | || | Sbjct 771 GTCTTG-AATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAA 713 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| ||||| || || || || ||||| ||||| Sbjct 712 TAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 >seq25532 Length=5913 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 |||||| || | ||| | || ||||| || | || || ||||| || || || ||||| Sbjct 914 TTGTCCACCGCGCAATCTGAGAACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATC 973 Query 29616 -CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG 29674 | ||||| | | || || || | ||||||||||||| | ||||||||||| ||||| | Sbjct 974 ACCCAATG-TCCTAGCGTCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTG 1032 Query 29675 GCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTT 29734 | || || || ||||| || || | ||| |||||| |||| | ||||| | | Sbjct 1033 GTGGGATGCCTTCTTTATCCTGAATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCT 1092 Query 29735 CTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| ||||| || || || || || |||||||| || || ||||| Sbjct 1093 CAACTTCAAGCGTTATTGTCTTTCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq3660 Length=14069 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC-CGC 29618 ||||| | | ||| || |||||||| | || ||||| ||||||||||| || || | | Sbjct 2517 CCTCCACGGAGACGGAGGACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCC 2458 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | | | || || | ||||||||||||| | ||||| | ||| ||||| || || Sbjct 2457 AATGTTCTGCCA-TCTTCCAATTGTTTGCCAGCAAAAATCAAGCGTTGTTGATCTGGTGG 2399 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || || ||||| ||| || | |||||| |||| | ||| || ||| ||| | Sbjct 2398 GATTCCTTCCTTCTCTTG-AATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAA 2340 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| | || || || || ||||| || || || || || || ||||| Sbjct 2339 CTTCCAATGTGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 2291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384840057271737