Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq71022 201 1e-46 seq36344 129 6e-25 seq25532 127 2e-24 seq144 109 5e-19 seq31860 105 7e-18 >seq71022 Length=3779 Score = 201 bits (222), Expect = 1e-46 Identities = 735/1139 (65%), Gaps = 40/1139 (4%) Strand=Plus/Plus Query 150722 TTGACAACTTGAAATTCGCCCGACAAAACACGTC--TCAAAAACAAATTACTGTGAAACG 150779 |||||||| || ||||| ||||| | ||||||| | | || | | |||| || | Sbjct 1119 TTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGA-TGTGTAA-G 1176 Query 150780 GTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCA 150839 |||||||||| || ||||| ||| |||||||| |||| || || ||||| |||| Sbjct 1177 GTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCA 1236 Query 150840 CAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATT-TTCAACTGTGACCAGTCC 150898 ||| | ||||| | | || | | |||| | | ||| | ||||| | ||| | | Sbjct 1237 AAAGTAGGGAATTTC-TGATACCTGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTC 1295 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 150958 ||||| || ||| | | ||||| || || ||||| || |||| || || | Sbjct 1296 CATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGG 1355 Query 150959 CTACCGGCAAACGTGCTATAAG-GC--TCACTAACAGATGCCAGTTCGTAACTGGCCTCG 151015 | || || | || ||| | || ||| | | | ||| ||| ||| || || Sbjct 1356 CAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGG---CCAATTCAGTACTAGCTTCC 1412 Query 151016 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 151075 | ||| ||| ||| | || || |||||||| ||||||| ||| | |||||| Sbjct 1413 AAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTC 1472 Query 151076 ACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATG 151135 |||| || |||| | | ||||||||| |||| || |||| ||| || || ||| Sbjct 1473 TCGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATG 1532 Query 151136 GGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATA 151195 |||||||| | |||||| ||| || | || | || || || || ||| |||||| Sbjct 1533 GGACGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATG 1592 Query 151196 ATTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAA 151255 |||||||||||| | ||| ||| ||| || | |||| | |||||||| Sbjct 1593 ATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAAC 1652 Query 151256 G---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTT 151312 | | |||||| | | | | |||| | |||||| || || | |||||| |||||| | Sbjct 1653 GTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACT 1712 Query 151313 TCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCG 151372 || || |||||| || || || | |||||| ||||||||||| || ||| Sbjct 1713 TCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCA 1772 Query 151373 CAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCG 151432 ||| ||| || ||| | ||| |||||||| ||||| | ||| || || || || Sbjct 1773 ATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCC 1832 Query 151433 GTTTCGGCTTGAATTTCTATAATGTTTCGCATTAATGTAACC-GCGGGCATTTG------ 151485 ||||| ||||| ||| |||||| ||| |||| | || | | || Sbjct 1833 GTTTCAACTTGAGATTCAATAATG----GCA-------AACCAGAGGTCCTGTGCCTTAA 1881 Query 151486 -CTCGCG---AAACTGGCCTTTATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCAC 151541 || ||| ||| | |||| | ||||| ||| ||||| | | |||||| || |||| Sbjct 1882 TCTGGCGAATAAAACGACCTTCTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCAC 1941 Query 151542 CATACGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTT 151601 | | || |||| || ||| ||||| | ||| ||||| || ||| || | || Sbjct 1942 CCCATGTGTCGTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAG 2001 Query 151602 CTTCAACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTT 151661 || || | || |||||| | ||| || | ||| | ||| | |||||||| || Sbjct 2002 ACTCGACCCTTTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCC 2061 Query 151662 TGGTGTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCC 151721 | ||||| |||| | ||| || || || | || | || ||| | |||| Sbjct 2062 TTCCTTCTTCCTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCC 2121 Query 151722 ACGGTTCAACGTACACTGCTTGGGCGCCTTTTCGC---TTGCCACCTTGATCCACGTGAC 151778 | ||||||| || | || ||||| || | || ||||| || ||||||| || Sbjct 2122 AAGGTTCAAGATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAAC 2181 Query 151779 GCACCATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGTA 151837 | || |||| || | ||||||| |||||||| || || | | ||||||| ||| Sbjct 2182 GAGCCGTATTGTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTA 2240 >seq36344 Length=11671 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137182 TGGCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCG 137241 || || || || | ||| | || ||||| | ||| ||||| || || |||||||| ||| Sbjct 905 TGACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCG 846 Query 137242 CTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 137301 || || | |||||||||||| || |||||| | |||| |||||| || || || Sbjct 845 GACAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGG 786 Query 137302 GGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCT 137361 || || ||||||||||| |||||| ||||| | || | ||||||| ||||| Sbjct 785 GGGATTCCTTCTTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCG 726 Query 137362 ACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||||| | || | || || || ||||| || || ||||||||||||||| Sbjct 725 ACTTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCATA 675 >seq25532 Length=5913 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137202 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 137261 ||| || || | |||||| ||||| || || |||||||| | || ||| || | |||||| Sbjct 935 AACCAAGTGCAATGTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTC 994 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 137321 | |||||| |||||| | |||| | ||| ||||| || || ||||||||||| || Sbjct 995 CAATTGTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATCCTG 1054 Query 137322 AATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTT 137381 |||||| || | ||| | |||||| | | || ||||||| || | ||||| Sbjct 1055 AATTTTACCCTTGACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCTT 1114 Query 137382 GCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||||||||| ||||| |||||||| Sbjct 1115 TCCTGTCAATGTTTTAACGAAAATTTGCAT 1144 >seq144 Length=14776 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | ||||| ||||| || |||||||| || | Sbjct 13540 CCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGAC 13481 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | ||||| | |||||| ||||| | |||| ||| |||||||| ||||| Sbjct 13480 AAAGTACGTCCA-TCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGG 13422 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| || || ||| | | ||| | || || | ||||| || Sbjct 13421 AATACCTTCTTTGTCTTGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGAC 13362 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | || | ||| || ||||| || ||||| ||||| ||||||||| Sbjct 13361 TTCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCATA 13313 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | ||| || || ||||| || ||||| ||| | Sbjct 14680 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 14621 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| ||||| | ||||||||| || | |||| ||| |||||||| ||||| Sbjct 14620 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 14561 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||||||||| || || || | | ||| | || |||| ||| || ||| Sbjct 14560 ATACCTTCTTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACT 14501 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || ||||| ||||| ||||| ||||| || ||||| Sbjct 14500 TCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | ||| || ||||| || ||||| ||||| | Sbjct 13200 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGAC 13141 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | ||||| | |||||| |||||| |||||| |||||||||||| || || Sbjct 13140 AGGGTACGTCCA-TCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 13082 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || ||| || ||| | | ||| | ||||| | || || || Sbjct 13081 GATACCTTCCTTATCTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAAC 13022 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || ||||| || || ||||| |||||||| Sbjct 13021 CTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | ||| | || ||||| | ||| || || ||||| |||||||| || | Sbjct 13768 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGAC 13709 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | ||||| | ||| || ||||| | || |||||||| ||||| ||||| Sbjct 13708 AAGGTACGTCCA-TCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGG 13650 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||||||||| || || || | | ||| | || || | ||| || || Sbjct 13649 AATACCTTCTTTGTCTTGGATCTTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGAC 13590 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | ||| | || || || ||||||||||| || || || |||||| Sbjct 13589 TTCCAAAGTGATGGTTTTTCCTGTCAATGTTTTAACAAAAATCTGCATA 13541 >seq31860 Length=14314 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||| | ||| || |||||||| |||||||| ||||| | ||| | ||||| Sbjct 1270 ACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTAAGTGTTTTGCCATCTTCC 1211 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||| |||||| | |||| | ||||||||| || || ||||||||||| || | Sbjct 1210 AATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTTTATCCTGA 1151 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || ||| | | ||| | | |||| | || |||||| || | || || Sbjct 1150 ATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTATTGTTTTT 1091 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 ||||| | ||||| | ||||||||||||| || Sbjct 1090 CCGGTTAGGGTTTTAATGAATATTTGCATACCT 1058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488050833152400