Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq7849 123 4e-23 seq46230 109 1e-18 >seq7849 Length=1912 Score = 123 bits (136), Expect = 4e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 || |||||| | |||||||| || |||| |||||| | | |||||||||||||||| Sbjct 1598 ACCCATGACGATTTATGGAATTCAGCACAGATACAGCTAGTTCGAGAAGGAAAAATGCAC 1657 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT 183129 | |||||||| ||||||||||| || |||||| | || |||||| ||| || ||| | Sbjct 1658 GGCTTTTTACGTATGTACTGGGCCAAGAAGATATTAGAGTGGACAGAAACACCAGAACAA 1717 Query 183130 GC-TTTGAGTTATAGTATCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAA 183188 || | ||| || || ||||| || || ||| || || || | || ||||| Sbjct 1718 GCACTAGAG-TACGCAATATATATAAATGATCGTTACAGTCTTGATGGAAGAGACCCTAA 1776 Query 183189 CGGATACGTAGGTTGTATGTGGTCTAT 183215 |||||| || ||||| ||||||||||| Sbjct 1777 CGGATATGTCGGTTGCATGTGGTCTAT 1803 >seq46230 Length=8760 Score = 109 bits (120), Expect = 1e-18 Identities = 179/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 142968 GATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTT 143027 |||| |||||| ||| | ||||| |||| | ||||| || | ||||| ||| | Sbjct 541 GATACAGATGAATGGGCATTGTGGAATAAAAGAGGAGATCCAGTTCTTCATATTGAATTG 600 Query 143028 AGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATA 143087 | | |||||| ||| | | |||| || || || ||||||||||| ||||||| Sbjct 601 GGAAAATGGGCTGATTTAATGGTTATTGCACCATTGGATGCAAATACGTTGTCAAAAATG 660 Query 143088 GCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAA 143147 ||||| || | |||||||||||||| |||| | |||| |||||| | || ||| Sbjct 661 GCCAATGGGCTCTGCGATAATTTACTTTTGTCTACAACGCGAGCTTGGGATTTGAAGAAA 720 Query 143148 CCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAA 143207 || | | ||||| || || ||||||| |||||||||||||| || || || | Sbjct 721 CCATTACTATTTTGCCCAGCAATGAATACAAGAATGTGGGAACATCCCATAACCCAACCA 780 Query 143208 CATATAGATGCTTTAAAA 143225 || ||| | ||||||| Sbjct 781 CAAATAAACCTTTTAAAA 798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902499240271520