Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq144 111 2e-19 seq25532 84.2 2e-11 >seq144 Length=14776 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| || || |||||||| ||| || ||| | | | || || | Sbjct 14659 AAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCA-TCTTCCAA 14601 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 || || || ||| |||| | |||||||| || ||||| || ||||| ||||| ||| Sbjct 14600 TTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGGAT 14541 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| || || | |||||| || || | ||||| |||||||| Sbjct 14540 CTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTGCC 14481 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| |||||| ||||||||||||||| Sbjct 14480 AGTCAAAGTTTTAACGAAAATCTGCATG 14453 Score = 102 bits (112), Expect = 8e-17 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || |||||||| || |||||||| || || ||| | | | || || | Sbjct 14203 AAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGGCCA-TCTTCCAA 14145 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| |||| | ||||| || || ||||||||||||||||| || ||| Sbjct 14144 TTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCCTTATC-TTGAA 14086 Query 133574 CTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| | ||| | | |||| || || | |||||| || || | ||||| |||||||| Sbjct 14085 TTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTGC 14026 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | || | ||||| ||||| || |||||| Sbjct 14025 CAGTTAAGGTTTTCACGAAGATTTGCATG 13997 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | || ||||||||||| |||||||| ||| || || ||| ||| || | Sbjct 12951 AAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGACAAGGT--ACGTCCGTCTTCCA 12894 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||||| || || | || | ||||||||||| || || || |||||||| || || Sbjct 12893 ACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGGA 12834 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||| | ||| || | ||||| || || | |||| ||| || | Sbjct 12833 TCTTAGCCTTTACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTCTTAC 12774 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| || || ||||| |||||||| Sbjct 12773 CAGTCAATGTCTTGACGAATATCTGCAT 12746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || ||| ||||||| || || || || ||||| || ||||| ||||| |||| Sbjct 13687 TGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATC 13628 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||| | | |||| || || | |||||| || || | |||| |||||| || Sbjct 13627 TTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTTTTTCCT 13568 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| || ||||||||||| Sbjct 13567 GTCAATGTTTTAACAAAAATCTGCAT 13542 >seq25532 Length=5913 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||||||||| ||||||||||| |||| || | ||| || | || ||||| Sbjct 948 GTAGACTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTCCAATTGTTTGCCA 1007 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || |||| | | || || || || ||||||||||| || || || || |||| Sbjct 1008 GCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATCCTGAATTTTACCCTTG 1067 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | |||| |||||||| | ||| || || | || | || || || |||| ||| Sbjct 1068 ACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCTTTCCTGTCAATGTT 1127 Query 133644 TTTACGAAAATCTGCATGGCT 133664 || |||||||| |||||| || Sbjct 1128 TTAACGAAAATTTGCATGCCT 1148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482932804830680