Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq71022 187 6e-42 seq39106 84.2 5e-11 >seq71022 Length=3779 Score = 187 bits (206), Expect = 6e-42 Identities = 415/618 (67%), Gaps = 11/618 (2%) Strand=Plus/Minus Query 110544 GATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAAC-TGCTCTTATTTCTAAAAA 110602 |||||| |||||| || ||||| ||| | ||| ||| | ||| || | |||||| Sbjct 2359 GATGATAGTATTGAGGGCATTTACGATAC-CTTGAAGCAGTGTGCGCTAGTATCTAAATC 2301 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 | || |||||||| | | ||||| |||||| | || ||| | ||||||| Sbjct 2300 TGCAGGCGGAATTGGCCTAAATGTTCACTGTATTCGGGCCAAGGGAACTTATATCGCCGG 2241 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || || ||||| ||| || || |||||||| |||| | |||| | || || Sbjct 2240 TACTAACGGCATTTCAAATGGCCTAGTACCAATGTTGCGAGTGTACAACAATACGGCTCG 2181 Query 110723 ATATGTGAATCAAGGTGGTAA---GAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 || ||| | || |||||||| |||| |||| | ||||| || ||||| |||||||| Sbjct 2180 TTACGTGGACCAGGGTGGTAATAAGAGACCTGGCGCTTTTGCCATTTATCTTGAACCTTG 2121 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAG 110839 ||| || | || || ||| |||| | |||||| || |||||| ||| Sbjct 2120 GCACGGGGACGTTTTCGAGTTCCTAGACTTGAAGAAAAATACGGGCAAGGAAGAAGGAAG 2061 Query 110840 AGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGA 110899 || ||||||||||||| || | ||||| ||||||| || ||| || | || | Sbjct 2060 GGCTCGTGATTTATTTTTCGCCCTTTGGATCCCAGATTTGTTTATGCAAAGGGTCGAGTC 2001 Query 110900 AAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGG 110959 |||| |||||| | | ||||| |||||| | ||||||||| || || || Sbjct 2000 TAATGAAATGTGGAGTTTGATGTGCCCTCATGAGTGCCCTGGTCTACACGACACATGGGG 1941 Query 110960 AAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGT---TTCGCAAACA 111016 | ||||||||| | | ||| | |||||||||||||||| | ||||| || Sbjct 1940 TGAGGAGTTTGAAAAATTGTACACACAATATGAAAAAGAAGGTCGTTTTATTCGC---CA 1884 Query 111017 AATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCC 111076 ||| || || || || ||||| || ||||||| ||||||||||| || || || Sbjct 1883 GATTAAGGCACAGGACCTCTGGTTTGCCATTATTGAATCTCAAGTTGAAACGGGTACGCC 1824 Query 111077 TTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAAT 111136 |||||| | || ||||| | ||| | |||||||| ||| ||| | ||||| || Sbjct 1823 TTATATGCTCTACAAAGACGCTTGTAACAGAAAATCTAACCAACAAAATATTGGAACCAT 1764 Query 111137 TAAGTCTAGTAATTTGTG 111154 ||| | || || ||||| Sbjct 1763 TAAATGCAGCAACTTGTG 1746 Score = 123 bits (136), Expect = 6e-23 Identities = 311/457 (68%), Gaps = 33/457 (7%) Strand=Plus/Minus Query 113000 AAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGGTAATAA 113059 ||| || ||||| |||||||||||||| || |||||||||||||| |||||||| || || Sbjct 1250 AAATTCCCTACTTTTGGCACCAATGCCAACCGCTTCGACTGCACAAATTCTCGGAAACAA 1191 Query 113060 TGAATGTTTCGAGCCAATTACAAGTAATA--TTTATGTCCGACGTGTTCTAGCAGGTGAG 113117 ||||| || || || ||||| | | | | || |||||||| ||| | ||||| Sbjct 1190 TGAATCATTTGAACC--TTACACATCAAACGTCTACAATCGACGTGTCCTATCGGGTGAA 1133 Query 113118 TTTGTACTTTGT-AATAAATATCTGCAAGAAGAACTTCTCGGAAT-CGGTAAATGGAACA 113175 || | |||| ||| | || ||| |||| || | ||| || | |||| || Sbjct 1132 TTCC-AGGTTGTCAATCATCATTTGCTTAAAGAT-TTAACTGAACGCGATTTATGGGACG 1075 Query 113176 ATGAAGTGAAAAACTCCATTATTGCTAATCAAGGTTCGGTTCAACATCTA----AAATTG 113231 |||| ||||||| ||| | || ||| | ||||| ||||| || | ||||| Sbjct 1074 ATGATATGAAAAATAAAATTTTGGCCAATAACGGTTCCATTCAAAATATTGAAGAAATTC 1015 Query 113232 CCT--GAT-TGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAG--CAACGTGTCG 113286 | | || | |||||| |||| || || |||||||| || | ||| ||| | Sbjct 1014 CATTTGACATTCGTGAAT--TGTAC--AAAACCGTTTGGGAAGTTTCGGTCAAAGTGGCC 959 Query 113287 TAATTGATATGGCTGCAGATCGTGGCAAGTTTATCGATCAATCTCAGTCGATGAACTTAT 113346 || | |||||||||||||| || || |||||||| || ||||| | ||| || Sbjct 958 --ATAAAAATGGCTGCAGATCGAGGAGCATTCATCGATCAGTCCCAGTCATTCAAC--AT 903 Query 113347 TTATGCCGGACACCTCACCAGATAAGG-----TGACATCTGCTCTATTTTACGGCTGGAA 113401 | ||| || | | ||| || || | || || || |||| ||||||||| Sbjct 902 TCATGTCGCCGAGC---CCAATTATGGAAAACTAACCTCAATTCACTTTTTCGGCTGGAA 846 Query 113402 AAAAGGTTTAAAAACAGGTATGTATTATTTGCGAACA 113438 | ||||||||||| || |||||||||||||||||| Sbjct 845 ATCTGGTTTAAAAACTGGAATGTATTATTTGCGAACA 809 >seq39106 Length=4904 Score = 84.2 bits (92), Expect = 5e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 |||||| |||| |||| | ||| || |||||||||||||| |||||||| |||||||| Sbjct 275 ACATTTAGATTTAATGAATGTGTCTGCACGCCTTATAATGCTGATTTTGACGGAGATGAG 334 Query 305465 ATGAATATGCATGTACCTCAATCA 305488 |||||| | ||| |||| ||| || Sbjct 335 ATGAATTTACATTTACCCCAAACA 358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185584805908477