Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq144 129 4e-25 seq36344 87.8 1e-12 seq25532 86.0 4e-12 seq31860 84.2 1e-11 >seq144 Length=14776 Score = 129 bits (142), Expect = 4e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | ||| |||||| || |||||||| || || Sbjct 13541 ACCACCACGGAGACGAAGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGA 13482 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || |||||||||||||| || ||||||||||||||||||||| | || Sbjct 13481 CAAAGTACGTCCATCTTCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGG 13422 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || |||| || | || | || || | ||| | Sbjct 13421 AATACCTTCTTTGTCTTGGATCTTAGCTTTC-ACGTTTTCAATAGTATCCGAAGGTTCGA 13363 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||||||||| || ||||| ||||| || || || |||||| Sbjct 13362 CTTCCAATGTGATCGTTTTTCCGGTTAAGGTTTTGACGAAAATTTGCATA 13313 Score = 116 bits (128), Expect = 2e-21 Identities = 172/240 (72%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | | ||| | |||||||| | || ||| ||||| || Sbjct 14464 AAAATCTGCATGCCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATA 14405 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || || | ||| || | || || |||||||| |||||||||||||||||||| Sbjct 14404 TTGTAGTCTGACAATGTACGGCCATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGT 14345 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 |||||| | || | |||||| || || |||||| | || ||||| || | ||||| Sbjct 14344 TGATCTGGAGGGATACCTTCCTTATCTTGAATTTT-AGCTTTAACATTTTCGATTGTGTC 14286 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | ||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 14285 CGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| |||| ||||| ||||| || |||||||| || ||||||||||| Sbjct 10774 ACCACCTCTCAAGCGTAGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGA 10715 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||||||| ||||| || ||||| | || || |||||| | || Sbjct 10714 TAGGGTATGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGG 10655 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || |||| || || || | || || ||| | Sbjct 10654 GATTCCTTCCTTATCTTGAATCTT-GGTTTTAATATTTTCAATGGAATCAGACCCTTCAA 10596 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || |||||||| || || ||||| |||||||| |||||| Sbjct 10595 CTTCTAAAGTTATGGTTTTACCGGTCAATGTTTTGACAAAGATTTGCATA 10546 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | || ||| ||||| || ||||| ||||| Sbjct 14681 ACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGA 14622 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||||| | || ||||||||||| ||||| ||||||||||||||||||||| | || Sbjct 14621 CAAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGG 14562 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | | ||| | || | ||| || | || | Sbjct 14561 AATACCTTCTTTGTCCTGGATCTT-GGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAA 14503 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || || ||||| || || |||||||| Sbjct 14502 CTTCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | || |||||| || ||||| ||||| || Sbjct 13201 ACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGA 13142 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || |||||||||||||| ||||| |||||||| ||||||||| | || Sbjct 13141 CAGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGG 13082 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || ||| || | || ||| | || | ||||||| | || | Sbjct 13081 GATACCTTCCTTATCTTGAATCTT-GGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAA 13023 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || ||||| || || || || ||||| Sbjct 13022 CCTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 12974 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||||| | || ||||||||| || ||||| || || Sbjct 14224 CCACCACGGAGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGAC 14165 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||||||| ||||| || |||||||||||||| |||||| | || Sbjct 14164 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGG 14105 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| || || |||||| | | |||| || | ||| || | || || Sbjct 14104 ATGCCTTCCTTATCTTGAATTTT-AGCCTTTACATTTTCAATGGTATCCGAGGGCTCGAC 14046 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 14045 TTCCAAGGTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | || ||| ||||| |||||||| || || Sbjct 13769 ACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGA 13710 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || |||||||| ||||| || ||||| | ||| || |||||| | || Sbjct 13709 CAAGGTACGTCCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGG 13650 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||||||| || || | | ||| | || | || || | || | Sbjct 13649 AATACCTTCTTTGTCTTGGATCTT-GGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGA 13591 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| ||||| ||||| || ||||| ||||| ||||||||| Sbjct 13590 CTTCCAAAGTGATGGTTTTTCCTGTCAATGTTTTAACAAAAATCTGCATA 13541 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| | || |||||| || || ||||| ||||| | || ||| |||| ||| Sbjct 12954 ACCAAATGCAATGTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCTTCC 12895 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTC 33656 || || ||||| ||||| |||||||||||||| ||| | || | |||||| || || Sbjct 12894 AACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATC 12839 >seq36344 Length=11671 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | || || || || |||||||| ||||| Sbjct 903 ACCACCACGGAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGA 844 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| |||| || | ||| || || |||||||||||||| || || ||| | || Sbjct 843 CAAGGTACGTCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGG 784 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| |||||| | || |||| || | ||||| | ||| | Sbjct 783 GATTCCTTCTTTGTCTTGAATTTT-AGCTTTTACATTCTCAATTGTGTCTGACGGTTCGA 725 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || || || || || || || |||||| Sbjct 724 CTTCCAATGTAATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCATA 675 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||||||| | || ||| ||||| || ||||| ||||| Sbjct 122 ACCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGA 63 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 | || || | || ||||||||||| ||||| ||||||||||||||||||||| Sbjct 62 CAAAGTACGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCT 8 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || || || |||||||| || ||||| || || Sbjct 675 ACCACCGCGAAGACGAAGGACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGA 616 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || |||||||||||||| |||||||||||||| |||||| | || Sbjct 615 CAAAGTACGGCCATCTTCTAATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGG 556 Query 33642 CACACCTTCTTTGTC 33656 | |||||| || || Sbjct 555 AATACCTTCCTTATC 541 >seq25532 Length=5913 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/206 (70%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 33545 AATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATT 33604 |||||||| |||||| || || |||||||| | ||| | |||| ||||||| Sbjct 945 AATGTAGA-----CTCTTTCTGGATATTGTAATCACCCAATGTCCTAGCGTCTTCCAATT 999 Query 33605 GTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTT 33664 |||| || ||||||||||| | || |||||| | || | |||||||| || ||||| Sbjct 1000 GTTTGCCAGCAAAAATCAATCTTTGTTGATCTGGTGGGATGCCTTCTTTATCCTGAATTT 1059 Query 33665 TCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCT 33723 | || ||| || | |||||| || || || |||| ||| || || || ||| Sbjct 1060 TACCCTT-GACACTTTCAATCGTGTCGGCTGCCTCAACTTCAAGCGTTATTGTCTTTCCT 1118 Query 33724 GTTAACGTTTTTACAAAGATCTGCAT 33749 || || ||||| || || || ||||| Sbjct 1119 GTCAATGTTTTAACGAAAATTTGCAT 1144 >seq31860 Length=14314 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | ||| | || |||||||| | ||| ||||||||| |||||||| ||| Sbjct 1288 CCGCCGCGCAATCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTCGCTA 1229 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | || ||||||||||| || ||||||||||| | ||||||||| | || Sbjct 1228 AGTGTTTTGCCATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGG 1169 Query 33643 ACACCTTCTTTGTC 33656 | |||||||| || Sbjct 1168 ATGCCTTCTTTATC 1155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328380480997440