Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq144 120 7e-22 seq36344 93.3 1e-13 seq25532 84.2 5e-11 >seq144 Length=14776 Score = 120 bits (132), Expect = 7e-22 Identities = 139/185 (75%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 |||||| | || |||||||||||||| |||||||| ||| ||| || || | ||| Sbjct 13328 CAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCGGATACTATTGAAAA 13387 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||| ||||| |||||||| ||| || || || | | || | Sbjct 13388 CGTGAAAGCTAA-GATCCAAGACAAAGAAGGTATTCCTCCAGATCAGCAGCGTTTGATTT 13446 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 |||| ||||| || |||||||||||| | |||||| | || |||||| | |||||||||| Sbjct 13447 TCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAGAAAGAGT 13506 Query 206363 CTACT 206367 ||||| Sbjct 13507 CTACT 13511 Score = 111 bits (122), Expect = 4e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| | ||||||||||| |||||||||||||| || || || Sbjct 13545 CAGATTTTTGTTAAAACATTGACAGGAAAAACCATCACTTTGGAAGTCGAGCCCTCGGAT 13604 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| ||||| |||||||| ||| || || ||| Sbjct 13605 ACTATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAACAA 13664 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| |||||||| |||||||||||| | || ||| | || |||||| | Sbjct 13665 CGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGTACCTTGTCAGACTACAACATT 13724 Query 206353 CAGAAAGAGTCTAC 206366 || || ||||| || Sbjct 13725 CAAAAGGAGTCGAC 13738 Score = 102 bits (112), Expect = 2e-16 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||| || | || || || || ||||||||||| || || ||||| Sbjct 12749 CAGATATTCGTCAAGACATTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATCTGAT 12808 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||| || || || ||||| ||| || ||| || Sbjct 12809 ACGATCGAGAACGTAAAGGCTAAGATCCAGGATAAGGAAGGTATTCCACCAGACCAGCAG 12868 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || ||||||||||||||||| ||| | || ||| |||| ||||| | Sbjct 12869 CGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGACGTACCTTGTCCGACTACAATATT 12928 Query 206353 CAGAAAGAGTCTAC 206366 |||||||||||||| Sbjct 12929 CAGAAAGAGTCTAC 12942 Score = 91.5 bits (100), Expect = 3e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| | || || ||||| || ||||| ||||| ||| | ||||| Sbjct 10550 CAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACTTTAGAAGTTGAAGGGTCTGAT 10609 Query 206233 ACAGTCGAATC-AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 | | ||| | |||| | || ||||||||| || |||||||| || || || Sbjct 10610 TCCATTGAAAATATTAAAACCAA-GATTCAAGATAAGGAAGGAATCCCACCAGATCAACA 10668 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | || || ||||| |||||||| |||||||||||| || | |||||||||| | Sbjct 10669 ACGCCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACATACCCTATCCGATTACAATAT 10728 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 || ||||| || || || ||| Sbjct 10729 TCAAAAAGAATCGACGCTACAC 10750 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| | || || ||||| || || || ||||| ||| ||||||| Sbjct 7699 CAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACCTTAGAAGTTGAAGGTTCTGAT 7640 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 | | || || ||| ||||||||||| || ||||||||| || || ||| Sbjct 7639 TCCATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAACAA 7580 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || ||||| |||||||| |||||||| ||| | || | | || |||||| | Sbjct 7579 CGCCTCATTTTCGCTGGAAAGCAATTGGAAGACGGACGTACCCTATCTGACTACAACATT 7520 Query 206353 CAGAAAGA 206360 || ||||| Sbjct 7519 CAAAAAGA 7512 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| ||| | || ||||| || || || ||||| || || ||| ||||| | ||| Sbjct 12988 CAAGACGTTGACTGGAAAGACCATTACATTGGAGGTTGAGCCTTCCGACACCATTGAAAA 13047 Query 206244 AGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCT 206302 || ||||| || ||||||||| || ||||| || || || ||| | | |||| Sbjct 13048 CGTTAAAGCCAA-GATTCAAGATAAGGAAGGTATCCCCCCAGATCAGCAACGTTTGATCT 13106 Query 206303 TCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 | || ||||| || |||||||||||| | || || | ||||| ||| | |||||||||| Sbjct 13107 TTGCTGGAAAACAATTGGAAGATGGACGTACCCTGTCAGATTATAACATTCAGAAAGAGT 13166 Query 206363 CTAC 206366 | || Sbjct 13167 CGAC 13170 >seq36344 Length=11671 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || ||||| ||| || | || |||||||| || || |||||||| ||| || ||| Sbjct 679 CAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCAGAC 738 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || ||||| || ||| |||||||| ||||||||||| || ||| || Sbjct 739 ACAATTGAGAATGTAAAAGCTAAA-ATTCAAGACAAAGAAGGAATCCCCCCAGACCAACA 797 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | || || || || ||||| | ||||| ||| | || ||| |||| |||||| | Sbjct 798 ACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTACAACAT 857 Query 206352 CCAGAAAGAGTCTAC 206366 |||||| || || || Sbjct 858 CCAGAAGGAATCAAC 872 >seq25532 Length=5913 Score = 84.2 bits (92), Expect = 5e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | |||||||| || || || | ||||| || | ||||| | ||| Sbjct 1129 AAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCCGACACGATTGAAAGT 1070 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || |||||||| || || || |||||| | || || Sbjct 1069 GTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAACAAAGATTGATTTTT 1010 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || |||||||| | ||||| |||| |||||||| |||||||||||||| Sbjct 1009 GCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAATATCCAGAAAGAGTCT 950 Query 206365 ACTCTTCACCTTGTTTTGAGA 206385 || | ||| | ||| | ||| Sbjct 949 ACATTGCACTTGGTTCTCAGA 929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180597971126197