Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq71022 127 2e-24 seq31860 118 9e-22 seq25532 100 3e-16 seq144 100 3e-16 >seq71022 Length=3779 Score = 127 bits (140), Expect = 2e-24 Identities = 697/1095 (64%), Gaps = 26/1095 (2%) Strand=Plus/Plus Query 136639 ACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTT 136698 ||||| ||||| || | ||| |||| ||||| |||| || ||| ||||| || || ||| Sbjct 777 ACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAAATAATACATTCCAGTTTTT 836 Query 136699 AAACCCTTCTCCCAG--GAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGG 136756 ||||| | |||| ||| || | | || || | | || ||| | || |||| Sbjct 837 AAACCAGATTTCCAGCCGAAAAAGT--GAATTGAGGTTAGTTTTCCATAATTGGGCTCGG 894 Query 136757 CCACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGT 136816 | || || || | || ||| |||||||||| | | ||| || ||||| ||||| | Sbjct 895 CGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCTCGATCTGCAGCCATTT 954 Query 136817 TCAATAGTACTTTTTGCTTAATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCG 136876 | | ||||| | || ||||||| ||||||| | | || | | | Sbjct 955 TTATGGCCACTTTGACCGAAACTTCCCAAACGGTTTTGTACAATTCACGAATGTCAAATG 1014 Query 136877 GAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTTTCATCATGAGATCAG 136936 ||||||| || ||||| || | || ||||| || | ||||| | | | |||| Sbjct 1015 GAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAATTTTATTTTTCATATCA- 1073 Query 136937 TCGAGT-ATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGATAT 136995 ||| ||| | || || | | | | | | ||| ||||| || || || || Sbjct 1074 TCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGATGATTGACAACCTGGAAT 1133 Query 136996 TCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTGAACGGCTCGAACGATTCGTTG 137055 || |||||||| || | || ||| | || ||| | || || || ||||| ||| Sbjct 1134 TCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAGGTTCAAATGATTCATTG 1193 Query 137056 TTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATTCCGT 137115 || || | ||| |||||||||| || || ||||| || | | | ||||| | Sbjct 1194 TTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCAAAAGTAGGGAATTTCTG 1253 Query 137116 AAACCGTGTACGGCCAATTGT-TGCTTGAGCTCTTTCCAGTTCCACAGAT-TGTTCGATT 137173 | ||| ||| | ||||| | ||||| | || | ||| ||||| | || |||| | || Sbjct 1254 ATACC-TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAATTCCATAAATCTGTTGGTTT 1312 Query 137174 GGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCTGCATAAG 137233 | | | ||||| ||| ||||||||| || ||| | || | || |||||| Sbjct 1313 ----TTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTGGGCAGCCTTCATAAG 1368 Query 137234 AATCATATGTTCCGTGCAGTTTCG-CCAGTTCAATACTCTGGACTAGTGCGCCATAGTAA 137292 ||||| || || | || ||||| ||| |||| |||| | | || ||||| ||| Sbjct 1369 TCTCATAGGTGCCTT-CAATTTCGGCCAATTCAGTACTAGCTTCCAAGGCACCATAATAA 1427 Query 137293 ATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGGCATATCC 137352 || || ||| | |||| | |||||| | ||||||| ||| ||||| || | | Sbjct 1428 ATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTCTCGTAAGGGTAACGC 1487 Query 137353 AATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACCGATAGGTCTGTGTTTAAAA 137412 | || || ||||| || | || |||| || || || || || | ||| | | | Sbjct 1488 ATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGGGACGATGTCTCATA 1547 Query 137413 TTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTTGCGTCTATAATTCTATTGAGATTG 137472 || ||| || ||| | |||||||||||| | || || ||| |||| | ||| Sbjct 1548 TTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGATTTTATTCAAATTT 1607 Query 137473 TTAGTAACGACTCTGGACACTTTGTAGAGCAATTC--GAAATCGAAGCTTTTAGACTGTT 137530 || || ||| | | | |||| | | | ||| |||||| || |||| | | Sbjct 1608 TTCGTTACGGTTTTTGTGACTTCTTTCA--ATTTCTTGAAATCAAACGTTTT---TTCAT 1662 Query 137531 TGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTTGCATACGGCCGTTTC-TGTATTG 137589 | || |||| |||| | |||||| ||||| || || || ||||| ||| | | | Sbjct 1663 TAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACTTCATCTTTAC 1722 Query 137590 TCGCTGTATTGTACAATTTCGGCGCAAAGATTGCTGTTTCGGATCACTCCCAAATTCTTT 137649 | | |||| ||||| || | || | |||||| | || ||| | ||| | | Sbjct 1723 TTG-AATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAATATTTTGT 1781 Query 137650 TGATT-GTTTTTCTCGTTGACGTGATCTTTATATATCATATACGGAGTTCCGGTTTCGAC 137708 || || | |||||| | | | | ||||| || | |||||| || || || ||||| || Sbjct 1782 TGGTTAGATTTTCTGTTACAAGCG-TCTTTGTAGAGCATATAAGGCGTACCCGTTTCAAC 1840 Query 137709 TTGAGTCTCAACAAT 137723 ||||| |||| ||| Sbjct 1841 TTGAGATTCAATAAT 1855 >seq31860 Length=14314 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || | ||||| ||||||||||| | || || | |||| || | | Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||| |||| || | || ||| || ||| |||||||| || || || || |||||| Sbjct 1122 GATTCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAG 1181 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | |||| | ||||||||| | ||||||| | || | ||||| ||||| Sbjct 1182 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTACAAC 1241 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 ||||||||||| ||||| | ||||| || |||||||| | || ||| Sbjct 1242 ATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATTGCGCGGCGGA 1289 >seq25532 Length=5913 Score = 100 bits (110), Expect = 3e-16 Identities = 168/242 (69%), Gaps = 1/242 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || |||||||| || ||||| | || ||| | ||||| || || Sbjct 1145 CATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGC 1086 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || || || |||||| |||||||| || || || || ||||| Sbjct 1085 CGACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCA 1026 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 |||||| | |||| | ||||||||| | ||||| | ||| | | | |||||||| Sbjct 1025 ACAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAA 966 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA-AAATGATCAT 25412 ||| || ||||| || || | || || || | |||||| | || ||| ||| || || Sbjct 965 TATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGGACAAAAGACTAT 906 Query 25413 TC 25414 || Sbjct 905 TC 904 >seq144 Length=14776 Score = 100 bits (110), Expect = 3e-16 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||||| ||||| ||| | || || | ||||| |||| Sbjct 10547 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACTTTAGAAGTTGAAGGGTCT 10606 Query 25235 GATACTATCGAGCA-AGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| | || || | | |||||| || | | | ||||| || || || || || ||||| Sbjct 10607 GATTCCATTGAAAATATTAAAACCAAGATTCAA-GATAAGGAAGGAATCCCACCAGATCA 10665 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATG-ATAGAAA-TGTCAGCGATTAC 25351 ||| | ||||||| || || || ||| | ||||||| | | | | || ||||||| Sbjct 10666 ACAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACATACCCTATC--CGATTAC 10723 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||||||||| || | || || || || | |||||||| || Sbjct 10724 AATATTCAAAAAGAATCGACGCTACACTTGGTCCTACGCTTGAGAGGTGG 10773 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || ||||| |||||||||||| ||||||| | ||||||||| | Sbjct 13314 ATGCAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCG 13373 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || ||| || || || ||||| ||||| || || |||||| Sbjct 13374 GATACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 13433 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | |||| || || |||||| | ||||||| | | | | || ||||| Sbjct 13434 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAAC 13493 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||| || || | ||||| || Sbjct 13494 ATTCAGAAAGAGTCTACTTTGCATTTGGT 13522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444645093894240