Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq71022 616 2e-171 seq1270 176 6e-39 >seq71022 Length=3779 Score = 616 bits (682), Expect = 2e-171 Identities = 1278/1886 (68%), Gaps = 25/1886 (1%) Strand=Plus/Plus Query 68356 ATTTTATCCTTATCCAATGTAAACTGAATGGG--TGAGGATGCGGGTTTTGTACGTAGAT 68413 ||||| || ||||| | ||||| ||||||| | | | || |||||||| || | || Sbjct 763 ATTTTGTC-TTATCGACGGTAAATTGAATGGCATTAACG--GCTGGTTTTGTTCGCAAAT 819 Query 68414 AGTACATACCGGTTTTCAGACCTAGACT-CCATCCGTAGAAATGCATACTTGTTAGTTTG 68472 | ||||| || ||||| | ||| ||| | ||| ||| | || || || |||||||| Sbjct 820 AATACATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTTTT 878 Query 68473 GAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCT 68532 |||| | || ||||| | |||||| || | || || ||||||||||| |||||| Sbjct 879 CCATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTCCT 938 Query 68533 CTATCTGCCGCCATTTTTATAATACTCTTTTGA--GGAATTTCCCAAATAGTCTTAAAAA 68590 | |||||| ||||||||||| | |||| || | || |||||||| || || | | Sbjct 939 CGATCTGCAGCCATTTTTATGGC-CACTTT-GACCGAAACTTCCCAAACGGTTTTGTACA 996 Query 68591 TCTGTTTGATATCATCTGGAAGGC--TCG-TATTTTGAATGGATCCACCATCGGATATAA 68647 | || ||| ||||| || ||||||||||||| || || || | || Sbjct 997 ATTCACGAATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCAAAA 1056 Query 68648 TTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCG 68707 || |||| || || ||||| | ||| || | | || |||||| || |||| | ||| Sbjct 1057 TTTTATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAATGAT 1116 Query 68708 GATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATG 68767 |||| || | || ||||| || |||| || | ||| |||| | || || || | Sbjct 1117 GATTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGTAAG 1176 Query 68768 GTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCA 68827 |||| | |||||||| ||||| |||||||| ||||| || || |||||||| ||||||| Sbjct 1177 GTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTGCCA 1236 Query 68828 CCAATAAACTATTTCTAAGACCATGTGTTATG---ATTTTATCTTTTAGATGTTTCCAAT 68884 | || |||||| | ||| |||| || ||||| | || | | | ||||| Sbjct 1237 AAAGTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCTTCAATTCATCCCAAT 1293 Query 68885 CCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCAT 68944 ||| | ||| | |||| | ||| | || || || | ||| || ||||| | Sbjct 1294 TCCATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAACTG 1353 Query 68945 ATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTA 69004 | || | ||| || ||||| | ||||| ||| || | |||| ||| || || | Sbjct 1354 GGCAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTTCCA 1413 Query 69005 ATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTAT 69064 | ||||| |||||||| || |||||||| | | || | ||| |||||| || | Sbjct 1414 AGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGCTCT 1473 Query 69065 CGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAG 69124 || | || ||| | | || ||||||||||| |||| |||||||| ||||| || || | Sbjct 1474 CGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAATGG 1533 Query 69125 GTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 69184 | | ||||||| |||| || || ||||||||| || |||||| | || | ||| || | Sbjct 1534 GACGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAATGA 1593 Query 69185 TTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA-- 69242 ||||||| | |||| ||| ||| || || || | ||| |||||||| Sbjct 1594 TTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAAACG 1653 Query 69243 -TCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCT 69301 | | ||| ||||||||||||||| || | || || | |||||| || || || | Sbjct 1654 TTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAACTT 1713 Query 69302 CATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCA 69361 ||| | ||| ||||| | ||||||||||| | || || ||||| || || || | Sbjct 1714 CATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTCCAA 1773 Query 69362 GATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAG 69421 |||||| || ||| ||| ||||||| ||||| ||||| || ||| | || ||||| | Sbjct 1774 TATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTACCCG 1833 Query 69422 TTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGT 69481 |||||| |||||||| ||||| | ||| | | || || || || | | Sbjct 1834 TTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAATAA 1893 Query 69482 AACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCAT 69541 |||| ||||||||||||||||| || | ||| || || || ||||| || | Sbjct 1894 AACGACCTTCTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGTCGT 1953 Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601 | ||||| || |||| || |||||||| ||||| |||| | || || | || Sbjct 1954 GTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACCCTTT 2013 Query 69602 TCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCAT 69661 |||||| | ||| || |||||||| || | ||| | ||| | | || |||||| | Sbjct 2014 GCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCTTCCT 2073 Query 69662 TTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGAT 69721 | || |||||||| || | || || ||||| | || || ||||| ||||| |||| Sbjct 2074 TGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCAAGAT 2133 Query 69722 ATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTAT 69781 | || || | | || |||| ||||| || ||||| || | ||| | || || || | Sbjct 2134 AAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTATTGT 2193 Query 69782 TATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAAC 69841 | || |||| || ||| || | | ||||| || | || || || || | |||||| Sbjct 2194 TGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATATAAG 2253 Query 69842 TTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTA 69901 |||| | || |||||| || | ||| || ||||| ||||| |||||| | || Sbjct 2254 TTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGATACTA 2313 Query 69902 GAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGA 69960 | ||||| | ||||| || || || || ||||| || |||||||| |||| || || | Sbjct 2314 GCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTCAATA 2373 Query 69961 AGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCG 70020 |||| || | |||| ||| || | || |||| ||| |||||||| || || Sbjct 2374 AGAAGCAAGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGACGCA 2432 Query 70021 TGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCAC 70080 |||||||| | |||||| | ||| || || || ||||| || || || || ||| | Sbjct 2433 TGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTCCTCC 2492 Query 70081 TGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTA 70140 |||||| |||| || || | ||||||||||||||| || || || || ||| Sbjct 2493 CCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTTCCCC 2552 Query 70141 TTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAG 70200 || || ||||||| || ||| ||||| ||||| || || ||||| ||||| ||| Sbjct 2553 TTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCCAAAA 2612 Query 70201 TCTCTTTCGTAAATAATAACAGAATT 70226 || | |||||||| || | ||||| Sbjct 2613 TCACGATCGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 176 bits (194), Expect = 6e-39 Identities = 367/543 (68%), Gaps = 13/543 (2%) Strand=Plus/Minus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 || || ||||| || || || ||||| ||||| || |||||||| | ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 |||||||||| || ||||| | | || || || | | ||| |||||| ||| Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCT---ATC 10643 Query 39446 AA---TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATG 39502 || ||| || ||||| ||||| || ||| | ||| | || |||||||| || | Sbjct 10642 AATAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGC 10583 Query 39503 AGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGC--CTCTGTTA 39560 | | |||||||| || || |||| || || | ||| || || || || | | | || Sbjct 10582 ATATCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATA 10523 Query 39561 TTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGG 39620 | |||||| | || || | | ||| || | ||| | ||||| | ||||| Sbjct 10522 ATTTCGATGATTCT--TTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGG 10465 Query 39621 CGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAG 39680 | ||||| || |||| || ||||| | | ||| | |||||| || ||||| || |||| Sbjct 10464 CAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAG 10405 Query 39681 GCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGC 39740 |||| || ||||| || || ||||| || |||| ||||||| ||| ||||| || | Sbjct 10404 GCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTC 10345 Query 39741 CTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCC 39797 |||| || || |||||||| | || | ||||||||| | | | | | | ||||| Sbjct 10344 CTTCGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCC 10285 Query 39798 ACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 | | |||||||| || ||||| || ||||| || | || || | ||||| || | Sbjct 10284 ATTGAATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATA 10225 Query 39858 GAT 39860 ||| Sbjct 10224 GAT 10222 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||| | |||||||| || |||| || ||| |||||||||||||| | || || || || Sbjct 7473 ATCTCTTACATATGTGTCGATTAGCAAACTGTACATTTCTGAATGCACATTCTCCATTGC 7414 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 || || ||||| || ||||||||||||||||||| Sbjct 7413 AATTTGGAATCCATAGAAACATCTTGCTTCAGTAA 7379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686215391325480