Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq26050 203 3e-47 seq41364 107 2e-18 seq1270 102 6e-17 >seq26050 Length=12756 Score = 203 bits (224), Expect = 3e-47 Identities = 408/597 (68%), Gaps = 16/597 (3%) Strand=Plus/Minus Query 19242 AATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGT 19301 |||||| || ||| |||||||| || ||||| ||| | || |||| || || || Sbjct 3028 AATTGGTGGTTTGGACAAAGAGTTCAATGCTATCTTCCGTCGTGCTTTTGCCTCACGAGT 2969 Query 19302 TTTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTA 19361 ||| | | || | | | |||||||| || || || || || |||| ||||| Sbjct 2968 TTTCCCACCTGAGATAGTCGAGCAATTGGGGTGCAAGCACGTCAAAGGTATTTTACTTTA 2909 Query 19362 TGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAA 19421 ||| || || || ||| |||||||| || || || || || |||| || | || Sbjct 2908 TGGTCCTCCTGGAACTGGTAAAACATTGATGGCTCGACAAATTGGTAA--TATGTTGAAT 2851 Query 19422 ACAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 | | | || |||||||| ||||||||| | || || | || || || ||| |||| Sbjct 2850 GCT-CGTGAGCCAAAAATTGTTAATGGTCCTCAGATTTTGGACAAGTACGTCGGTGAATC 2792 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 |||| |||| | || || || || || ||||| ||||| || ||||| | || || | Sbjct 2791 TGAAGCAAATATTCGTCGATTATTCGCAGACGCCGAAGAGGAGGAAAAAAGATTGGGTCC 2732 Query 19539 CAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG 19598 || ||| ||||| || || || | |||||| | || || || ||||| |||||| Sbjct 2731 TAACAGTGGATTGCATATAATTATTTTCGATGAAATTGATGCCATTTGTAAAGCAAGAGG 2672 Query 19599 TTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCT-GTCAAAAT 19651 || ||| | | ||| || ||||| || || |||||||| | || | |||||| Sbjct 2671 ATCGGTTGCTGGGGCTACTGGGGTTCATGATACCGTGGTCAATCAGTTGCTTGCCAAAAT 2612 Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711 | || ||||| | ||| |||| |||||||| || ||||||||||| || |||| ||| Sbjct 2611 T-GATGGTGTCGAACAATTGAACAATATTTTGGTCATTGGCATGACAAACAGACGGGACA 2553 Query 19712 TAATAGACAGCGC-CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTA 19770 | || ||| || |||| | |||||||| || |||| | | || ||||| | || Sbjct 2552 TGATTGACGAAGCTCTTA-TGCGACCCGGACGAATGGAGGTCCAAATGGAAATCAGTTTG 2494 Query 19771 CCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAA 19827 ||| |||| |||||||| ||||||| ||||| || ||| || |||||| || Sbjct 2493 CCCAATGAGGAAGGACGTGTTCAAATTTTGAACATTCACACAAAAAGAATGCGAGAA 2437 >seq41364 Length=3858 Score = 107 bits (118), Expect = 2e-18 Identities = 288/434 (66%), Gaps = 10/434 (2%) Strand=Plus/Plus Query 40704 ACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAGGT 40763 |||||||||| | |||||| ||| | || || ||||| | |||||||| || ||| Sbjct 1876 ACTACAAAAAGGGTTTTTTGGCGAGGAGTGGCTGAGGAACTACTTTGGTTTATTAAGGGT 1935 Query 40764 TGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCT 40823 |||| |||| ||| | ||| || | | || | ||||||| ||| ||||| | Sbjct 1936 AGTACAAATGTCAAGGATTTACAGGAGAAAAATGTTCGCATTTGGGATGGCAACAGTACC 1995 Query 40824 AAAACATATTT-GTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGT 40882 |||||| | || ||||||| ||||| || || ||||| | || || || Sbjct 1996 CGTGAATATTTAGACTCTT-TAGGATTGACCGATAGAGAGGAGGGTGACTTGGGACCAGT 2054 Query 40883 TTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGT-ACTCTGATTATA 40941 |||||| ||||| | ||| ||||| || ||| |||| | || ||| || ||||||| Sbjct 2055 TTATGGCTTTCAATGGCGTCATTTCGGGGCAGAATACAAAACC-TGTCACGATGATTATT 2113 Query 40942 CCAATAAAGGAATGGATCAATTACAGTGCG---TTATAGATACGATTAAATCCGATCCCG 40998 | ||||| | |||||||| || || | || | | |||||| | | ||| Sbjct 2114 CAGGCCAAGGAGTCGATCAATT---GTCCGAAGTCATTAACAGAATTAAAACGAAACCCC 2170 Query 40999 ATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGC 41058 | || || || || || | || |||||||| | |||| ||| ||||| || | Sbjct 2171 ACGATCGTCGAATTATTATGAGTGCCTGGAACCCGATGGACCTACCAAAAATGGCCTTAC 2230 Query 41059 CACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGT 41118 |||| || || | || ||||||||||| ||| |||| | || || ||| ||| Sbjct 2231 CACCCTGCCACTGTTTGGCCCAGTTTTACGTGGCCAACAATGAATTATCGTGCCAACTGT 2290 Query 41119 ATCAAAGATCAGGT 41132 | |||||||| ||| Sbjct 2291 ACCAAAGATCGGGT 2304 >seq1270 Length=21014 Score = 102 bits (112), Expect = 6e-17 Identities = 337/515 (65%), Gaps = 28/515 (5%) Strand=Plus/Plus Query 44072 AAACATAAAGCAGACTGGGCCCTTAAATGGATAA--ATTCA-AATGATTCTTTTGGAGAA 44128 ||| | || || || ||||| || |||||||| | ||| || | || |||||| Sbjct 10257 AAAAAGAAGGCCGATTGGGCTATTCAATGGATATGCAGTCAGAACGCCAATTACGGAGAA 10316 Query 44129 CGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATA 44188 || || | || ||||| | || ||||| |||||||| ||| ||||| |||| Sbjct 10317 CGCATTATAGCATTTGCTGCCGTCGAAGGAATTTTCTTCAGCGGAAGTTTTGCTTCCATT 10376 Query 44189 TTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGT 44248 || ||| | |||||||| || | |||||||| |||| || ||||| || | || | Sbjct 10377 TTCTGGCTTAAGAAACGTGGCCTTATGCCTGGTCTGACATTCTCAAACGAACTCATTTCT 10436 Query 44249 CGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGAT 44308 ||||||||||| ||||| ||||| ||||| ||| | | | | || || || | | Sbjct 10437 CGTGATGAAGGATTACACTGCGACTTTGCCTGCCTTATGTTCCGTTA-CT--TAGTCCAG 10493 Query 44309 AAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAA 44368 || || || | | ||| | || ||| | || || || | || ||||| ||| Sbjct 10494 AAACCAACAAAAGAAAGAATCATCGAAATTATCCGTGAAGCTGTTGAAATTGAACAGGAA 10553 Query 44369 TTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAAT---GAACTTTTGATGAAC 44425 || | ||| || ||||| || || | | || |||||| ||||| ||| Sbjct 10554 TTCTTAACAGATGCCTTACCAGTTGATATGCTTGGCATGAATTGCAAACTT---ATGTCA 10610 Query 44426 CAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGG--GTTG--CGA---TA- 44477 |||||||||||| | |||| || | || | | ||| ||| || | ||| || Sbjct 10611 GAATATATTGAATTCGTTGCTGACAGACTATTGATAGAATTGGGAGTCGGACGAATTTAC 10670 Query 44478 AACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAA 44537 ||||||| |||| || || |||| |||||| |||||| | |||||||| | Sbjct 10671 AACACTA--------AAAATCCATTCAATTTCATGGAATCTATTTCACTAGAAGGCAAGA 10722 Query 44538 CAAACTTTTTTGAAAAACGCGTTGGAGAATATCAG 44572 | || || || ||||| || || ||||||||| Sbjct 10723 CGAATTTCTTCGAAAAGAAAGTCGGCGAATATCAG 10757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397064813495785