Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq71022 134 2e-26 >seq71022 Length=3779 Score = 134 bits (148), Expect = 2e-26 Identities = 446/687 (65%), Gaps = 9/687 (1%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||| ||||| |||||| |||||||| ||||||| || || | |||||||| || || Sbjct 1157 GTAGACGTTTGATGTGTAAGGTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGA 1216 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 || |||||||||||||||| | || || | | ||| | | || | Sbjct 1217 AGCGGTTGGCATTGGTGCCAAAAGTAGGGAATTTCTGATACCTGTTTTGGCAATTTTCTG 1276 Query 110827 CTTGAGAACATCCCAGT--CGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||| | ||||||| | | || | | ||||||| | ||||||||||| |||| Sbjct 1277 CTTCAATTCATCCCAATTCCATAAATCTG-TTGGTTTTTTGT-CCCACATGTCATACTGC 1334 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 | | |||| | || | || ||| | || ||||||| |||| ||| ||| Sbjct 1335 AAAATGCCTTTACTAACTGGGCAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCC 1394 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 |||||| || || |||| || | | ||| || || || || || | |||| Sbjct 1395 AATTCAGTACTAGCTTCCAAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAAT 1454 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 | |||||| || || | | ||| || | |||||| |||| || | || Sbjct 1455 AATTGGGCTTCTTCGCTCTCGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCC 1514 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGG 111123 ||||| || | ||||| || | |||| |||||| || ||| || ||| | || Sbjct 1515 TGAACGCCAATTCCAATGGGACGATGTCTCATATTCGATGTTCTAGCT-TCTGGGATCGG 1573 Query 111124 ATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG 111183 |||||| || ||||||| | || | |||||| || || | ||||||| ||| | Sbjct 1574 ATAAAAGTTGACATCAATGATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTT 1633 Query 111184 AAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGA 111243 | ||| | ||||||| || | || | | | ||| || | | ||| ||||| Sbjct 1634 CAATTTCTTGAAATCAAACGTTT---TTTCATTAGTAACAAACATATTCAAGGCAATTGA 1690 Query 111244 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAA 111303 |||||||| || || || ||||| ||| || || || | ||| |||||||| || Sbjct 1691 GGCCAAATTACAGACGGCAACTTCATCTTTACTTGAATATTCGACAATCTCTGTACACAA 1750 Query 111304 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTT 111363 |||| | ||||| || || | ||| | ||||||| || |||| || || || || Sbjct 1751 GTTGCTGCATTTAATGGTTCCAATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTT 1810 Query 111364 GTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||||||||| || ||||| ||||| || Sbjct 1811 GTAGAGCATATAAGGCGTACCCGTTTC 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627398025247200