Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq71022 122 1e-22 >seq71022 Length=3779 Score = 122 bits (134), Expect = 1e-22 Identities = 474/740 (64%), Gaps = 25/740 (3%) Strand=Plus/Plus Query 118136 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 118195 ||| | ||||||||| || ||||||| ||| |||| |||| || | || Sbjct 1112 ATGATGATTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGT 1171 Query 118196 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGG 118255 ||| || ||||| | |||||||| || | ||||| || || || || || ||||| || Sbjct 1172 GTAAGGTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGG 1231 Query 118256 TGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCA 118315 ||||| || ||| || | || ||| ||| ||| | ||| | | ||||| Sbjct 1232 TGCCAAAAGTAGGGAATTTCTGATACCTGTTTTGGCAATTTTCTGCTTCAATTCATCCCA 1291 Query 118316 GT--CGTA-----GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTT 118368 | | || |||| | ||| | |||| |||| ||| |||| | || |||| Sbjct 1292 ATTCCATAAATCTGTTG-GTTTTTTGTCCC------ACATGTCATACTGCAAAATGCCTT 1344 Query 118369 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGC 118428 |||| | || ||| | |||||||| | ||| |||| || |||||||| | | Sbjct 1345 TACTAACTGGGCAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTAC 1404 Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCT 118488 | || || | ||| | | ||| || || || ||||| | |||| | | ||| | Sbjct 1405 TAGCTTCCAAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTT 1464 Query 118489 CGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGA 118548 | ||| || | | | || | |||||| |||| || | || || || || | Sbjct 1465 CTTCGCTCTCGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAA 1524 Query 118549 GGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT-CCACGGGATAAAAATTC 118607 ||||| || |||||||||||||| || | | ||| ||| | |||||||| || Sbjct 1525 TTCCAATGGGACGATGTCTCATATTCGATGTTCTAGC-TTCTGGGATCGGATAAAAGTTG 1583 Query 118608 CTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCG 118667 ||| || | |||| | |||||| || || ||||||| ||| | | || | | Sbjct 1584 ACATCAATGATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTG 1643 Query 118668 TAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACGCCAGA 118724 ||||||| || | ||||| | ||| || || | ||| ||||| |||| | Sbjct 1644 AAATCAAA------CGTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAA 1697 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 ||||| || | ||||| ||| | || || | ||| || || |||||||| Sbjct 1698 TTACAGACGGCAACTTCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTG 1757 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 | |||||||| || | || | ||| || || ||| ||||||| || || ||||| ||| Sbjct 1758 CATTTAATGGTTCCAATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGC 1817 Query 118845 ATGTATGGCGTCCCCGTCTC 118864 || || ||||| ||||| || Sbjct 1818 ATATAAGGCGTACCCGTTTC 1837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617810912856920