Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq71022 109 6e-19 >seq71022 Length=3779 Score = 109 bits (120), Expect = 6e-19 Identities = 593/939 (63%), Gaps = 23/939 (2%) Strand=Plus/Minus Query 104906 TCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 104965 |||||| || || ||||| || || ||||| ||||||||||| |||||| ||| | Sbjct 1846 TCTCAAGTTGAAACGGGTACGCCTTATATGCTCTACAAAGACGCTTGTAACAGAAAATCT 1787 Query 104966 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTT 105025 || ||| | ||| | || || || | ||| | |||||||| || | |||| | Sbjct 1786 AACCAACAAAATATTGGAACCATTAAATGCAGCAACTTGTGTACAGAGATTGTCGAATAT 1727 Query 105026 ACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTG 105085 || |||||||| || || ||||| | || ||||| || | | || ||| Sbjct 1726 TCAAGTAAAGATGAAGTTGCCGTCTGTAATTTGGCCTCAATTGCCTTGAATATGTTTGT- 1668 Query 105086 GATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACC 105145 | | | ||| || ||||||| | ||| | | ||||| || ||||| || || Sbjct 1667 --TACTAATGAAAAAACGTTTGATTTCAAGAAATTGAAAGAAGTCACAAAAACCGTAACG 1610 Query 105146 AAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATC 105204 ||||| | || | | | |||||| || ||||| || | ||| ||| | | ||| Sbjct 1609 AAAAATTTGAATAAAATCATTGATGTCAACTTTTATCCGATCCCAGA-AGCTAGAACATC 1551 Query 105205 TAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCT 105264 ||||||||||| ||||| ||||| | || |||||||| | || |||| ||| || || Sbjct 1550 GAATATGAGACATCGTCCCATTGGAATTGGCGTTCAGGGCATGGCTGATGCATTTATCCT 1491 Query 105265 TTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGAC 105324 || || | | || ||| ||||| | | | || | || || ||||| Sbjct 1490 AATGCGTTACCCTTACGAGAGCGAAGAAGCCCAATTATTGAACCAACAAATTTTCGAGAC 1431 Query 105325 CATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGA 105384 || ||| | | || | || || ||| | || ||||| || |||| || | ||||| Sbjct 1430 GATTTATTATGGTGCCTTGGAAGCTAGTACTGAATTGGCCGAAATTGAAGGCACCTATGA 1371 Query 105385 AACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA 105444 || | ||| || | |||| | |||| | | || | ||| ||||||| | | Sbjct 1370 GACTTATGAAGGCTGCCCAGTTAGTAAAGGCATTTTGCAGTATGACATGTGGG-ACAAAA 1312 Query 105445 GACCA--AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 105502 |||| || || | | | ||||| | | ||| | || | | ||| | Sbjct 1311 AACCAACAGATTTA-TGGAATTGGGATGAATTGAAGCAGAAAATTGCCAAAACAGGTATC 1253 Query 105503 CGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 105562 | || || || |||| ||||||||||| || || || |||||||| | || || Sbjct 1252 AGAAATTCCCTACTTTTGGCACCAATGCCAACCGCTTCGACTGCACAAATTCTCGGAAAC 1193 Query 105563 AATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAG 105622 ||||||| |||||||| ||||| | ||| |||| || | ||| |||| || Sbjct 1192 AATGAATCATTTGAACCTTACACATCAAACGTCTACAATCGACGTGTCCTATCGGGTGAA 1133 Query 105623 TTTGTGATTGTCAACAAGCATCTCGT----GGATGACCTCAAAGAGATTGGTCTCTGGTC 105678 || | ||||||| | ||| | | | | | || || | |||| | ||| Sbjct 1132 TTCCAGGTTGTCAATCATCATTTGCTTAAAGATTTAACTGAACGCGATT----TATGGGA 1077 Query 105679 CAAGGATATGAAGGATCTCATGGTGAAAGCGGGT---GGTTCCATTCAAAATATTGTGGA 105735 | | |||||||| || || || || | ||||||||||||||||||| || Sbjct 1076 CGATGATATGAAAAATAAAATTTTG---GCCAATAACGGTTCCATTCAAAATATTGAAGA 1020 Query 105736 TATTCCAAATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGT 105795 |||||| ||| ||| | |||||| || ||||||||| | | | || | | Sbjct 1019 AATTCCATTTGACATTCGTGAATTGTACAAAACCGTTTGGGAAGTTTCGGTCAAAGTGGC 960 Query 105796 CATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCA 105834 ||| | ||||| |||||||| || ||||| ||||| Sbjct 959 CATAAAAATGGCTGCAGATCGAGGAGCATTCATCGATCA 921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582672020094680