Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq36344 149 7e-31 seq144 134 2e-26 seq3660 122 1e-22 seq25532 96.9 4e-15 >seq36344 Length=11671 Score = 149 bits (164), Expect = 7e-31 Identities = 174/234 (74%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 |||||||| || |||||||| | || || || |||||||| | || || || |||| Sbjct 676 ATGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCA 735 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | | | |||| ||| | || ||||||||||| ||||| || ||||| || |||||| Sbjct 736 G---ACACAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGAC 792 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || ||| | ||||||||||| ||||||||||| || | |||||| | | ||||| Sbjct 793 CAACAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTAC 852 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 || |||| |||||||| || | ||| | ||| | ||||| || ||||| ||| Sbjct 853 AACATCCAGAAGGAATCAACATTGCATTTGGTCCTCCGTCTCCGTGGTGGTCAA 906 Score = 116 bits (128), Expect = 4e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27471 CATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCG 27530 ||||| |||| | ||||| || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 513 CATTGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGTATTCCACCAGATCAACAGCG 572 Query 27531 TCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCA 27590 | | ||||| || || || ||| | || |||| ||||| | | ||||| ||| | || Sbjct 573 TTTGATTTTCGCCGGAAAACAATTAGAAGATGGCCGTACTTTGTCTGACTACAATATTCA 632 Query 27591 AAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||| ||||| || ||||| | ||| | |||||||||||||| Sbjct 633 AAAAGAATCTACGCTTCACTTGGTCCTTCGTCTTCGCGGTGG 674 >seq144 Length=14776 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || ||||| || || || | || || ||| | Sbjct 13998 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14057 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | |||||||||||||| || ||||| || || |||||||| || Sbjct 14058 GATACCATTGAAAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATCCCTCCAGATCAA 14117 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| ||||| |||||| | || |||| || || | | ||||| ||| Sbjct 14118 CAGCGTTTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCTGACTACAAT 14177 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||| || || || | ||| | || | ||||| || ||||| Sbjct 14178 ATCCAAAAAGAGTCGACATTGCATTTGGTACTCCGTCTCCGTGGTGG 14224 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| | || || ||||| || ||| | ||||| ||| || Sbjct 12745 AATGCAGATATTCGTCAAGACATTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATC 12804 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| || | || | |||||||| || ||||| ||||| || ||||| |||||||| Sbjct 12805 TGATACGATCGAGAACGTAAAGGCTAAGATCCAGGATAAGGAAGGTATTCCACCAGACCA 12864 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| ||||| | || || | |||||| | | ||||| || Sbjct 12865 GCAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGACGTACCTTGTCCGACTACAA 12924 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || || || || | ||| | || | |||||||| || || Sbjct 12925 TATTCAGAAAGAGTCTACATTGCATTTGGTTCTCCGTCTTCGTGGAGG 12972 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || | || ||||| ||||| || | || |||||| | Sbjct 14454 ATGCAGATTTTCGTTAAAACTTTGACTGGCAAAACTATCACCTTGGAAGTTGAGCCCTCA 14513 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| || || |||||||| || || ||||||||||| ||| Sbjct 14514 GATACCATTGAAAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGATCAG 14573 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || ||||| ||| | || |||| || || | | ||||| ||| Sbjct 14574 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGATGGCCGCACTTTGTCCGACTACAAT 14633 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || | ||| | ||| | ||||| || ||||| Sbjct 14634 ATTCAAAAGGAGTCGACATTGCATTTGGTCCTCCGTCTCCGTGGTGG 14680 Score = 129 bits (142), Expect = 7e-25 Identities = 147/196 (75%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||||||||| || | ||||| || || || || | || ||||| |||| Sbjct 7702 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACCTTAGAAGTTGA---AGGT 7646 Query 27466 ---GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 ||| ||||| ||| | ||||| || ||||| || ||||| |||||||||||||| Sbjct 7645 TCTGATTCCATTGAGAATGTTAAGGCCAAGATTCAAGATAAGGAAGGAATTCCTCCAGAT 7586 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || || || ||||| ||||| |||||| | || || | ||||||||| | ||||| Sbjct 7585 CAACAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGACGGACGTACCCTATCTGACTAC 7526 Query 27583 AATGTCCAAAAGGAAT 27598 || | ||||| |||| Sbjct 7525 AACATTCAAAAAGAAT 7510 Score = 125 bits (138), Expect = 8e-24 Identities = 152/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 ||||||||||||||||| || | ||||| || || || ||| | || ||||| ||| Sbjct 10547 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACTTTAGAAGTTGAAGGGTC- 10605 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| ||||| |||| | || | || ||||| || ||||| ||||| || ||||| Sbjct 10606 --TGATTCCATTGAAAATATTAAAACCAAGATTCAAGATAAGGAAGGAATCCCACCAGAT 10663 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || || || || ||||| ||||| |||||| | || |||| | ||||||| | || || Sbjct 10664 CAACAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACATACCCTATCCGATTAC 10723 Query 27583 AATGTCCAAAAGGAATCCACTCTTCA 27608 ||| | ||||| ||||| || || || Sbjct 10724 AATATTCAAAAAGAATCGACGCTACA 10749 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || || || || ||| | || || ||| | Sbjct 13542 ATGCAGATTTTTGTTAAAACATTGACAGGAAAAACCATCACTTTGGAAGTCGAGCCCTCG 13601 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||||| || || || ||||| || || ||||||||||| || Sbjct 13602 GATACTATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 13661 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||| ||||| |||||| | || |||| |||||| | ||||||| || Sbjct 13662 CAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGTACCTTGTCAGACTACAAC 13721 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || | ||| | ||| | ||||| || ||||| Sbjct 13722 ATTCAAAAGGAGTCGACATTGCATTTGGTCCTCCGTCTCCGTGGTGG 13768 Score = 125 bits (138), Expect = 8e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || | || ||||| || || || | || || ||| | Sbjct 14226 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14285 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || ||||||||||| || ||||| || || |||||||| || Sbjct 14286 GACACAATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCAGATCAA 14345 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | |||||||| || || ||| | || |||| ||||| | ||||||| ||| Sbjct 14346 CAGCGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACTACAAT 14405 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || | ||| | || | ||||| || ||||| Sbjct 14406 ATCCAAAAGGAGTCGACATTGCATTTGGTACTCCGTCTCCGTGGTGG 14452 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | ||||| || || || || | || || || | Sbjct 13314 ATGCAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCG 13373 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| |||| ||||| || || ||||| || || ||||||||||| ||| Sbjct 13374 GATACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 13433 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| ||||| || ||| | || |||| ||||| | | ||||| || Sbjct 13434 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAAC 13493 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || ||| | ||| | ||| | ||||| || ||||| Sbjct 13494 ATTCAGAAAGAGTCTACTTTGCATTTGGTCCTTCGTCTCCGTGGTGG 13540 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || ||||| || || || | || || ||| | Sbjct 13770 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 13829 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||||| || || ||||| ||||| || || || ||||| || Sbjct 13830 GATACCATCGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGTATCCCACCAGATCAA 13889 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| || || || ||| | || |||| ||||| | | ||||| ||| Sbjct 13890 CAGCGTTTGATTTTCGCAGGAAAACAATTAGAAGATGGCCGTACTTTGTCTGACTACAAT 13949 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || || | ||| | || | ||||| || ||||| Sbjct 13950 ATCCAAAAGGAGTCGACATTGCATTTGGTACTCCGTCTCCGTGGTGG 13996 >seq3660 Length=14069 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || ||||| || || | || ||||| | Sbjct 2291 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTGGAAGTTGAAGCTTCG 2350 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | |||||||| ||||| || ||||| ||||| || ||||| || Sbjct 2351 GATACTATTGAAAATGTCAAGGCTAAGATTCAAGAGAAGGAAGGAATCCCACCAGATCAA 2410 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | ||||||||||| || ||| | || |||| | || | | ||||| || Sbjct 2411 CAACGCTTGATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACATTGGGCGACTACAAC 2470 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| || | ||| | ||| | ||||| || || || Sbjct 2471 ATTCAAAAGGAATCGACATTGCATTTGGTCCTCCGTCTCCGTGGAGG 2517 >seq25532 Length=5913 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || | || || ||||| || || ||||| |||||| ||| Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | | |||| |||||||||||| || || || || || ||||| || Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||||||||| || ||| | || || | | | || | | || || ||| Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| || || || || | || | || | | | |||||||||||| Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGGACAA 914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569734693037840