Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq144 129 4e-25 >seq144 Length=14776 Score = 129 bits (142), Expect = 4e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || ||||||||| || || || ||||| | ||| || Sbjct 14443 AGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGG 14384 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| |||||||| || ||||||||||| || || || | || ||| Sbjct 14383 CCATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCC 14324 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | |||||| | |||||||| | ||| ||||||| ||| Sbjct 14323 TTATCT-TGAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGT 14265 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || ||||| |||||||| || || |||||| Sbjct 14264 GATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCATG 14225 Score = 114 bits (126), Expect = 8e-21 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || |||||||||||| || || || || | || || Sbjct 14671 AGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGG 14612 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||||||||| || || |||||||| || || || || | || || Sbjct 14611 CCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCT 14552 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | |||||| | ||| || ||| | ||| ||||||| ||| Sbjct 14551 TTGTCCTGGATC-TTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGT 14493 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || || || ||||| || |||||||||||| Sbjct 14492 GATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCATG 14453 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || ||||||||||||||| || ||||| | || || Sbjct 13759 AGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGT 13700 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || || || || | ||| ||||| || || || | || || Sbjct 13699 CCATCTTCCAATTGCTTTCCAGCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCT 13640 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | |||||| | ||| || || | ||| ||||||| || Sbjct 13639 TTGTCTTGGATC-TTGGCCTTAACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGT 13581 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || ||||| |||||||||||||| Sbjct 13580 GATGGTTTTTCCTGTCAATGTTTTAACAAAAATCTGCAT 13542 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || ||| || ||||||||||||||||| || || || Sbjct 13191 AGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGT 13132 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| || ||||| || ||||| || || || || || | || ||| Sbjct 13131 CCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCC 13072 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| || | ||||||| | ||| ||||| ||| || |||| || Sbjct 13071 TTATCT-TGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGT 13013 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || || || ||||| || || ||||| |||||| Sbjct 13012 AATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCATG 12973 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || ||| ||||| || || || || || | ||| || Sbjct 14215 AGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCGG 14156 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||| || || || || || ||||||||||| || || || | || ||| Sbjct 14155 CCATCTTCCAATTGCTTTCCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCTTCC 14096 Query 34609 TTGTCTGTGATCTTTTG-TTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| ||| ||| | |||| | ||| || || | ||| ||||||| ||| Sbjct 14095 TTATCT-TGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAGGT 14037 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || ||||| || ||||| |||||||| || || |||||| Sbjct 14036 GATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCATG 13997 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 || ||||||||||| || || || || || || ||||||| | ||| || || || || Sbjct 7512 TCTTTTTGAATGTTGTAGTCAGATAGGGTACGTCCGTCTTCCAATTGCTTTCCAGCGAAA 7571 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || | || ||||| || || || | ||| ||||| ||| ||||| | ||||| | Sbjct 7572 ATGAGGCGTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTG-GCCTTAACATT 7630 Query 34636 AA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 ||| | || | || ||||| | |||||| ||||||||||| || ||||| || Sbjct 7631 CTCAATGGAATCAGAACCTTCAACTTCTAAGGTTATGGTTTTACCGGTCAATGTTTTGAC 7690 Query 34695 AAAAATCTGCAT 34706 ||| || ||||| Sbjct 7691 AAAGATTTGCAT 7702 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || ||||||||| || || || || || | || || Sbjct 13987 AGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGG 13928 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| || || || || ||||||||||| || || || | || ||| Sbjct 13927 CCATCTTCTAATTGTTTTCCTGCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCC 13868 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | |||||| | || || || | ||| ||||||| ||| Sbjct 13867 TTATCCTGGATC-TTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGT 13809 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || ||||| || || || || || || || || ||||| Sbjct 13808 GATGGTTTTGCCAGTCAATGTCTTGACGAAGATTTGCAT 13770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314419834964381