Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq66901 84.2 2e-11 seq52454 84.2 2e-11 >seq66901 Length=4174 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 64858 AATGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTAT 64917 ||||| ||| ||| ||||||||||||| ||||||| || |||||| | ||||||||| Sbjct 3271 AATGGCGCACCCTAAAGGATTCGAACCTTTGACCTACGGATTAGAAATCCGTTGCTCTAT 3330 Query 64918 CCAACTGAGCTAAGTGTGC 64936 ||| |||||||||| |||| Sbjct 3331 CCAGCTGAGCTAAGGGTGC 3349 >seq52454 Length=6553 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 64858 AATGGTACACACTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTAT 64917 ||||| ||| ||| ||||||||||||| ||||||| || |||||| | ||||||||| Sbjct 576 AATGGCGCACCCTAAAGGATTCGAACCTTTGACCTACGGATTAGAAATCCGTTGCTCTAT 635 Query 64918 CCAACTGAGCTAAGTGTGC 64936 ||| |||||||||| |||| Sbjct 636 CCAGCTGAGCTAAGGGTGC 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517713659384280