Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_028995.1 Length=43216 Score E Sequences producing significant alignments: (Bits) Value seq17833 118 3e-22 >seq17833 Length=32105 Score = 118 bits (130), Expect = 3e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 9083 ATTCAAGTTTTGCACAATTCAATTGTTTCCGAGAGaaaaacaaaaaaCGATATAGAAATT 9142 ||||| |||| || | || || | ||||||| |||||| ||| | ||||| ||| | Sbjct 6 ATTCAGATTTTACATGACTCTGTTATCTCCGAGAAAAAAACCAAAGAAGATATTGAAGTG 65 Query 9143 ACATTTGCAACAGAAAATGGTAATTCTCAAATTTTAAGTAAAAGTAATCGTGTTGGTATT 9202 || |||||||||||| || ||||| | || | ||| || || ||||| ||| Sbjct 66 ACTTTTGCAACAGAATCCAAAAACACTCAACTATTGGGAAAATCAAAACGAGTTGGCATT 125 Query 9203 GTGGTTTGGATGGATGCTGAGAAATACAATGAGGCTATAAAATGA 9247 |||||||||||||||||||| || ||||| ||||||||||||||| Sbjct 126 GTGGTTTGGATGGATGCTGATAAGTACAACGAGGCTATAAAATGA 170 Score = 102 bits (112), Expect = 2e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 37759 ATGAAAATGACAAAAGGTGGCTTTGATATATTACGCAAAGCCTTTGGCTCACTTACTCAG 37818 ||||| |||||| |||||| ||| ||||| | || || || || | | | || Sbjct 22648 ATGAAGATGACAGCAGGTGGATTTAATATACTGCGTAATAATTTAGGTCGATTAAACCAA 22707 Query 37819 ACACAAGTGAACGCTATTAATTTCTTAATTGATGAGTTTGACAAAGACAAATCAATCAGC 37878 | ||||| | |||||||| ||| | |||||| || ||||| ||||| || Sbjct 22708 AGCCAAGTTGATCAGATTAATTTTTTAGTATCTGAGTTCGATAAAGATAAATCCATTTCA 22767 Query 37879 TACCCACAAGCATCCTACATGCTTGCTACTACATGGCACGAAACAGCGCGCACGATGCTA 37938 || ||||||||| |||||||||||||||| |||||||| ||||| ||| || ||||| Sbjct 22768 TATCCACAAGCAGCCTACATGCTTGCTACCACATGGCATGAAACTGCGACAACCATGCTG 22827 Query 37939 CCTATCAAGGA 37949 ||||| |||| Sbjct 22828 CCTATTGAGGA 22838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138037096821652