Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq144 107 1e-18 seq36344 105 5e-18 seq31860 82.4 5e-11 >seq144 Length=14776 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | || || ||| || ||| | || |||||| | Sbjct 13314 ATGCAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCG 13373 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 || | | || || ||| || || |||||||||||| |||| || ||| Sbjct 13374 GATACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 13433 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 || || || ||||| || |||||||||||||| || | ||| | ||||| || |||||| Sbjct 13434 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAAC 13493 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||| |||||||||||||| | ||| | ||||| || Sbjct 13494 ATTCAGAAAGAGTCTACTTTGCATTTGGTCCTTCGTCTCCGTGGTGG 13540 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || ||||| || || ||||| ||||| ||||||||||| Sbjct 14547 GACAAAGAAGGTATTCCTCCAGATCAGCAGCGTTTGATTTTCGCCGGTAAACAATTGGAA 14606 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | |||| |||||||| ||||| || ||||| ||| || ||||||||||| | Sbjct 14607 GATGGCCGCACTTTGTCCGACTACAATATTCAAAAGGAGTCGACATTGCATTTGGTCCTC 14666 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 14667 CGTCTCCGTGGTGG 14680 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| |||| || ||||| || || || ||||| ||||| || ||||| Sbjct 12839 GATAAGGAAGGTATTCCACCAGACCAGCAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAA 12898 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| ||| | ||||||||| ||||| || || |||||| || |||||||||||| | Sbjct 12899 GACGGACGTACCTTGTCCGACTACAATATTCAGAAAGAGTCTACATTGCATTTGGTTCTC 12958 Query 28003 CGTTTGCGTGGCGGC 28017 ||| | ||||| ||| Sbjct 12959 CGTCTTCGTGGAGGC 12973 Score = 98.7 bits (108), Expect = 7e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 |||||||||||| |||| || || ||||| | ||||| || ||||| |||||||| Sbjct 13635 GACAAAGAAGGTATTCCTCCAGATCAACAACGTCTCATTTTCGCTGGAAAGCAATTGGAA 13694 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | |||||| || |||||||| ||||| ||| || ||||||||||| | Sbjct 13695 GATGGACGTACCTTGTCAGACTACAACATTCAAAAGGAGTCGACATTGCATTTGGTCCTC 13754 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 13755 CGTCTCCGTGGTGG 13768 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 || || |||||| | || || |||||||| || || ||||| |||||||||||||| Sbjct 13067 GATAAGGAAGGTATCCCCCCAGATCAGCAACGTTTGATCTTTGCTGGAAAACAATTGGAA 13126 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||| | | |||| ||||| ||||| || |||||| || ||||||||||| | Sbjct 13127 GATGGACGTACCCTGTCAGATTATAACATTCAGAAAGAGTCGACATTGCATTTGGTCCTC 13186 Query 28003 CGTTTGCGTGGCGG 28016 ||| | ||||| || Sbjct 13187 CGTCTCCGTGGTGG 13200 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| | ||||| ||| || || | || ||||| | | Sbjct 14226 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14285 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| || ||| ||||| || || |||||| | || | Sbjct 14286 GAC-----ACAATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCAG 14340 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || || || || ||||||||||| |||||||| || || | || | ||||| || | Sbjct 14341 ATCAACAGCGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACT 14400 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||| |||||||| ||| || ||||||||||| | ||| | ||||| ||| Sbjct 14401 ACAATATCCAAAAGGAGTCGACATTGCATTTGGTACTCCGTCTCCGTGGTGGC 14453 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || |||||||| | ||||| ||| || || | || ||||| | | Sbjct 13998 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14057 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||||| || || ||||| | || || | Sbjct 14058 GATACCATTGAAAAT--GTAAAGGCTAAAATTCAAGATAAGGAAGGCATCCCTCCAGATC 14115 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || || ||||| || ||||| |||||||| || | |||| ||||| || |||| Sbjct 14116 AACAGCGTTTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCTGACTACA 14175 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | |||||||||||| || ||||||||||| | ||| | ||||| ||| Sbjct 14176 ATATCCAAAAAGAGTCGACATTGCATTTGGTACTCCGTCTCCGTGGTGGC 14225 >seq36344 Length=11671 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || || || ||| | ||||| ||| ||||||| | || |||||| | Sbjct 676 ATGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCA 735 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || | ||| || ||| ||||| ||||||||||| | || || | Sbjct 736 GACACAATTGAGAAT--GTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGACC 793 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || |||||||| || || ||| | || |||| ||| | ||||||||| |||| Sbjct 794 AACAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTACA 853 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || || ||||||||||| | ||| | ||||| || Sbjct 854 ACATCCAGAAGGAATCAACATTGCATTTGGTCCTCCGTCTCCGTGGTGG 902 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || ||||| ||||| ||||||||||| || | || | |||||||| Sbjct 9 GATCAGCAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGAC 68 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || ||||| ||| || ||||||||||| | ||| | ||||| || Sbjct 69 TACAATATTCAAAAGGAGTCGACATTGCATTTGGTCCTCCGTCTCCGTGGTGG 121 >seq31860 Length=14314 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| || | ||||| || || || ||| || ||| |||| | || || | Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| || || || |||||||| | || || | Sbjct 1122 GATTCTATTGAAAAT--GTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATC 1179 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACG--AACGCAGCTTGTCCGATTA 27965 ||||| | || |||||||| || ||||||||||| || | || || | | ||| || Sbjct 1180 AGCAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAG--CGACTA 1237 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||||||| ||| ||||||||||| | | ||||| ||||| Sbjct 1238 CAACATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATTGCGCGGCGG 1288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355512150995739