Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq31860 147 1e-30 seq144 147 1e-30 seq25532 145 5e-30 seq36344 125 5e-24 seq3660 120 2e-22 >seq31860 Length=14314 Score = 147 bits (162), Expect = 1e-30 Identities = 196/268 (73%), Gaps = 7/268 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||| |||||||||| || |||||||| || || || |||| ||| | | Sbjct 1062 ATGCAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCA 1121 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| || ||| || |||||||| | || |||||||| Sbjct 1122 GATTCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAG 1181 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG--AACGCACTTTAGGCGATTACA 23788 || | || || ||||| ||||||||| ||||||| | || ||||| |||| |||| Sbjct 1182 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTA--GCGACTACA 1239 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAGCAG-TT 23847 |||| ||||||||||||||||| ||||| || |||| ||||| || ||| |||| Sbjct 1240 ACATTCAAAAAGAGTCCACATTGCATTTGGTCCTAAGATTGCGCGGCGGAGGGGCAGCCA 1299 Query 23848 AAAGATGAATTGTATTAATGTAAATGAT 23875 ||||| || ||| |||| ||||||| Sbjct 1300 AAAGAAGACTTG--TTAACTAAAATGAT 1325 >seq144 Length=14776 Score = 147 bits (162), Expect = 1e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| |||||| | || |||||||||||||| | ||||| || | || Sbjct 13314 ATGCAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCG 13373 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | ||| || || |||||||||||| | || |||||||| Sbjct 13374 GATACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAG 13433 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || || |||||| ||||||| | ||| ||||| || |||||| Sbjct 13434 CAGCGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAAC 13493 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || |||||||| || || ||||| || Sbjct 13494 ATTCAGAAAGAGTCTACTTTGCATTTGGT 13522 Score = 147 bits (162), Expect = 1e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| | || || ||||| ||||| | |||||||| || | Sbjct 14454 ATGCAGATTTTCGTTAAAACTTTGACTGGCAAAACTATCACCTTGGAAGTTGAGCCCTCA 14513 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || || || |||||||||||| | || |||||||| Sbjct 14514 GATACCATTGAAAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGATCAG 14573 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || ||||| |||||| ||||||| | |||||||| ||| ||||| Sbjct 14574 CAGCGTTTGATTTTCGCCGGTAAACAATTGGAAGATGGCCGCACTTTGTCCGACTACAAT 14633 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| ||||| ||||| || Sbjct 14634 ATTCAAAAGGAGTCGACATTGCATTTGGT 14662 Score = 141 bits (156), Expect = 6e-29 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||| | || || ||||| ||||| | ||||| || || || Sbjct 14226 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14285 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | |||| | ||||| | |||| || || || |||||| | || |||||||| Sbjct 14286 GACACAATCGAAAATGTTAAAGCTAAAA-TTCAAGATAAGGAAGGTATCCCTCCAGATCA 14344 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || ||||||||||||||| | ||||| | || || || || ||||| Sbjct 14345 ACAGCGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACTACAA 14404 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| ||||| ||||| || Sbjct 14405 TATCCAAAAGGAGTCGACATTGCATTTGGT 14434 Score = 138 bits (152), Expect = 8e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||| | || |||||||| |||||| | ||||| || || || Sbjct 13542 ATGCAGATTTTTGTTAAAACATTGACAGGAAAAACCATCACTTTGGAAGTCGAGCCCTCG 13601 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || || |||||||||||| | || ||||||||| Sbjct 13602 GATACTATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAA 13661 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || || ||| ||||||| | ||| || || || |||||| Sbjct 13662 CAACGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGTACCTTGTCAGACTACAAC 13721 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| ||||| ||||| || Sbjct 13722 ATTCAAAAGGAGTCGACATTGCATTTGGT 13750 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| |||||| | || || ||||| ||||| | ||||| || || || Sbjct 13998 ATGCAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 14057 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| |||| |||||| || || ||||| | || ||||||||| Sbjct 14058 GATACCATTGAAAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATCCCTCCAGATCAA 14117 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || || || || ||| ||||||| | ||||| || || ||||| Sbjct 14118 CAGCGTTTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCTGACTACAAT 14177 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||||||||| ||||| ||||| || Sbjct 14178 ATCCAAAAAGAGTCGACATTGCATTTGGT 14206 Score = 102 bits (112), Expect = 6e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || || ||||| ||||| | ||||| || || || Sbjct 13770 ATGCAAATCTTCGTCAAGACATTGACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCG 13829 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | || | | || || |||||| | || |||||||| Sbjct 13830 GATACCATCGAGAACGTTAAGGCCAAGA-TCCAGGATAAGGAAGGTATCCCACCAGATCA 13888 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||| || || || || |||||| | ||||| | || ||||| || ||||| Sbjct 13889 ACAGCGTTTGATTTTCGCAGGAAAACAATTAGAAGATGGCCGTACTTTGTCTGACTACAA 13948 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| ||||| ||||| ||||| || Sbjct 13949 TATCCAAAAGGAGTCGACATTGCATTTGGT 13978 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || || ||||| || ||| | |||||||| | Sbjct 10547 ATGCAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACTTTAGAAGTTGAAGGGTCT 10606 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || | |||||| ||||||||| || | || || || ||||| | || |||||||| Sbjct 10607 GATTCCATTGAAAATATTAAAACCAAGA-TTCAAGATAAGGAAGGAATCCCACCAGATCA 10665 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| || | || || || || || ||| ||||||| | || || || ||||||||| Sbjct 10666 ACAACGCCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACATACCCTATCCGATTACAA 10725 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || |||||||| || || |||| || || || | ||| |||| || Sbjct 10726 TATTCAAAAAGAATCGACGCTACACTTGGTCCTACGCTTGAGAGGTGG 10773 >seq25532 Length=5913 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||||||||| | || ||||| || || || || |||||||| | | Sbjct 1144 ATGCAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCC 1085 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | || |||||| || |||||||| | || ||||||||| Sbjct 1084 GACACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAA 1025 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| ||||||||| ||||||||| | || || || |||||||| Sbjct 1024 CAAAGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAAT 965 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || |||||||| ||||| || || ||| | || ||||| || ||| Sbjct 964 ATCCAGAAAGAGTCTACATTGCACTTGGTTCTCAGATTGCGCGGTGGA 917 >seq36344 Length=11671 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || |||||||| || || | ||||| || | | Sbjct 676 ATGCAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCA 735 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | ||||| |||||| ||||||||||| | || ||||| ||| Sbjct 736 GACACAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGACCAA 795 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||||| || ||||| ||||| ||||| ||||||| ||| || || ||| |||||| Sbjct 796 CAACGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTACCTTGTCCGACTACAAC 855 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || ||||| ||||| || Sbjct 856 ATCCAGAAGGAATCAACATTGCATTTGGT 884 >seq3660 Length=14069 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || || | || ||||| || ||||| | |||||||| | || Sbjct 2291 ATGCAAATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTGGAAGTTGAAGCTTCG 2350 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | || || ||| || || ||||| | || ||||||||| Sbjct 2351 GATACTATTGAAAATGTCAAGGCTAAGATTCAAGAGAAGGAAGGAATCCCACCAGATCAA 2410 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || || || || ||||| ||||||||| ||||||| | | || || ||||| |||||| Sbjct 2411 CAACGCTTGATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACATTGGGCGACTACAAC 2470 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || ||||| || || ||||| ||||| || Sbjct 2471 ATTCAAAAGGAATCGACATTGCATTTGGT 2499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337676922184556