Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq65283 132 1e-25 seq144 131 4e-25 seq36344 120 7e-22 seq51576 104 6e-17 seq52454 91.5 4e-13 seq48504 91.5 4e-13 >seq65283 Length=6707 Score = 132 bits (146), Expect = 1e-25 Identities = 135/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| ||||| ||| |||| || ||||| ||||| || ||||||||| | || || Sbjct 5700 CAAATTTATAACGTAATTGTTACAGCCCATGCATTTGTCATAATTTTCTTTATAGTAATA 5641 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || |||||||||||||| ||||| |||| |||| || || ||| Sbjct 5640 CCAATTATAATTGGAGGGTTCGGAAATTGATTAGTTCCGCTAATACTTGGGGCACCAGAT 5581 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC-CTTA 7725 || || |||||| | | || |||||||| |||||| |||| || || || |||| Sbjct 5580 ATAGCATTTCCACGAATAAATAATATAAGATTTTGAATACTTCCCCCCTCTCTTA 5526 >seq144 Length=14776 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || ||||| | |||||| |||| |||||| | |||||||| | || || || Sbjct 14650 GTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCGGCCATCTTCCAATTGTTTACCG 14591 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | || || || || || ||||||||||| ||||| |||||||| ||| Sbjct 14590 GCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCCTGGATCTTGGCCTTA 14531 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||| ||||| ||||||| || || || || ||||| || ||||| ||||||||| Sbjct 14530 ACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGTGATAGTTTTGCCAGTCAAAGTT 14471 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | ||||| Sbjct 14470 TTAACGAAAATCTGCAT 14454 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || ||||||| |||||| || | |||||| | |||||||||| || || || Sbjct 13966 GTCGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGGCCATCTTCTAATTGTTTTCCT 13907 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || | || ||||| || || || ||||||||||| || |||||||| ||| Sbjct 13906 GCGAAAATCAAACGCTGTTGATCTGGTGGGATACCTTCCTTATCCTGGATCTTGGCCTTA 13847 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || |||||||| || |||| || || || || ||||| || ||||| ||||| || Sbjct 13846 ACGTTCTCGATGGTATCCGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTCAATGTC 13787 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 13786 TTGACGAAGATTTGCAT 13770 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| || || ||||||||||| | ||||||||||| | || |||||| Sbjct 10758 AGGACCAAGTGTAGCGTCGATTCTTTTTGAATATTGTAATCGGATAGGGTATGTCCATCT 10699 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| |||||||| || || |||||||| || || || || |||||||| ||| Sbjct 10698 TCCAATTGCTTTCCAGCGAAAATGAGGCGTTGTTGATCTGGTGGGATTCCTTCCTTATCT 10639 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || | | ||| |||| || || ||| || ||||| || || || Sbjct 10638 TGAATCTTGGTTTTAATATTTTCAATGGAATCAGACCCTTCAACTTCTAAAGTTATGGTT 10579 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| ||||| | || | |||||| Sbjct 10578 TTACCGGTCAATGTTTTGACAAAGATTTGCAT 10547 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | || | ||| || ||||| || | ||||| || | |||||| | |||||| Sbjct 13525 AGGACCAAATGCAAAGTAGACTCTTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCT 13466 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | || || |||||||| || | || || || || || ||||||||||| |||||| Sbjct 13465 TCCAATTGTTTTCCAGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTCTTTGTCT 13406 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| ||| || || || || | ||| || || || |||||||| Sbjct 13405 TGGATCTTAGCTTTCACGTTTTCAATAGTATCCGAAGGTTCGACTTCCAATGTGATCGTT 13346 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||| | ||| | |||||| Sbjct 13345 TTTCCGGTTAAGGTTTTGACGAAAATTTGCAT 13314 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || ||||| | ||||| || | ||| || | |||||||| | ||||| ||| Sbjct 13738 GTCGACTCCTTTTGAATGTTGTAGTCTGACAAGGTACGTCCATCTTCCAATTGCTTTCCA 13679 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 ||||| || || |||||||| || || ||||||||||| |||||||||||||| ||| Sbjct 13678 GCGAAAATGAGACGTTGTTGATCTGGAGGAATACCTTCTTTGTCTTGGATCTTGGCCTTA 13619 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||| || || || |||| || || || || ||||| || || || ||||| ||| Sbjct 13618 ACGTTTTCAATAGTATCCGAGGGCTCGACTTCCAAAGTGATGGTTTTTCCTGTCAATGTT 13559 Query 225697 TT 225698 || Sbjct 13558 TT 13557 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || ||||||| |||||| || | ||| || | |||||||||| || || || Sbjct 14422 GTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACGGCCATCTTCTAATTGTTTGCCG 14363 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | || ||||| || || || ||||||||||| ||||| || ||| || || Sbjct 14362 GCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTCCTTATCTTGAAT-TTTAGCTTT 14304 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| |||||| ||||| |||| || || || || ||||| || ||||| || || || Sbjct 14303 AACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGTGATGGTTTTGCCAGTTAAGGT 14244 Query 225696 TTTTATGAACACTTGCAT 225713 ||| | ||| | |||||| Sbjct 14243 TTTCACGAAGATTTGCAT 14226 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || ||||| || | |||||| |||| ||| || | || ||||| | |||||| ||| Sbjct 12942 GTAGACTCTTTCTGAATATTGTAGTCGGACAAGGTACGTCCGTCTTCCAACTGCTTTCCA 12883 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || || ||||| || |||||||||||||| || |||||||| ||| Sbjct 12882 GCAAAGATCAAACGCTGCTGGTCTGGTGGAATACCTTCCTTATCCTGGATCTTAGCCTTT 12823 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||| || || || | || || || || ||||| ||||| || ||||| || Sbjct 12822 ACGTTCTCGATCGTATCAGATGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAATGTC 12763 Query 225697 TTTATGAACACTTGCATT 225714 || | ||| | |||||| Sbjct 12762 TTGACGAATATCTGCATT 12745 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || ||||| || | || ||||| | || || | |||||||| | || || ||| Sbjct 13170 GTCGACTCTTTCTGAATGTTATAATCTGACAGGGTACGTCCATCTTCCAATTGTTTTCCA 13111 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | ||||| || || || || ||||||||||| ||||| ||||| || Sbjct 13110 GCAAAGATCAAACGTTGCTGATCTGGGGGGATACCTTCCTTATCTTGAATCTTGGCTTTA 13051 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||| |||||||| || | || || || || || || ||||| || ||||| || Sbjct 13050 ACGTTTTCAATGGTGTCGGAAGGCTCAACCTCCAATGTAATGGTCTTTCCAGTCAACGTC 12991 Query 225697 TTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 12990 TTGACGAAAATTTGCAT 12974 >seq36344 Length=11671 Score = 120 bits (132), Expect = 7e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||| || |||| ||||| |||| ||| || | || ||||| || ||||| ||| Sbjct 872 GTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACGTCCGTCTTCGAGTTGCTTGCCA 813 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || || || | ||||||||||| || || || ||||| |||||||| || ||| || || Sbjct 812 GCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTCTTTGTCTTGAAT-TTTAGCTTT 754 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGT 225695 ||| || || |||||||| | ||| || || || || || || || || |||||||| Sbjct 753 TACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGTAATAGTTTTTCCAGTCAAAGT 694 Query 225696 TTTTATGAACACTTGCAT 225713 || | ||| | |||||| Sbjct 693 CTTGACGAATATTTGCAT 676 Score = 114 bits (126), Expect = 3e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||| | ||||| | ||| || || ||||||||||| | |||||| || | |||||| Sbjct 668 CGAAGACGAAGGACCAAGTGAAGCGTAGATTCTTTTTGAATATTGTAGTCAGACAAAGTA 609 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||||| || || || ||||| || | || ||||| || || ||||||||| Sbjct 608 CGGCCATCTTCTAATTGTTTTCCGGCGAAAATCAAACGCTGTTGATCTGGTGGAATACCT 549 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGT 225650 ||||| || |||||||| ||| ||| ||| ||||| Sbjct 548 TCCTTATCCTGGATCTTGGCCTTTACATTTTCAATGGT 511 >seq51576 Length=13142 Score = 104 bits (114), Expect = 6e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 7487 TATTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTA 7546 |||||||| | ||| | ||| |||||||||| || ||| || ||||| | | | Sbjct 8146 TATTTTCTGTTATTTTTAGGCTAGAATTAGCAATGCCCGGTGGGCATATATTAGGGGCAA 8205 Query 7547 ATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTG 7606 || |||||| || || || | ||||| || ||||| | ||||| | || || | Sbjct 8206 ATTACCAACTATATAATGTATTAATTACTGCTCATGCGATAATTATGGTATTTTTCATGA 8265 Query 7607 TTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTC 7666 ||||||| | | | | || || || || |||| || || || | | || ||||| | Sbjct 8266 TTATGCCAGCTTTATTTGGTGGGTTTGGTAATTACTTTGTACCAATTTTAATAGGTGCAC 8325 Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTG 7706 | || ||||||||||||||||| || |||||||||||||| Sbjct 8326 CAGACATGGCTTTTCCAAGGCTAAATAATATAAGTTTTTG 8365 >seq52454 Length=6553 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || || || ||||||||||| || |||||||| || || ||||| ||||||||||||||| Sbjct 5128 AAAATCTGTCCATCAGTAATTGATATAACATTGGTTGGAATATATGCAGAAACATCACCT 5069 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || || || || | || || || || || || || ||||||||| Sbjct 5068 GCCTGGGTCTCAATAATGGGCAAAGCCGTAAGAGAACCACCACCA 5024 >seq48504 Length=3620 Score = 91.5 bits (100), Expect = 4e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 372611 GCAATTACTTATAGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGAC 372670 |||| | ||||||||| ||| | ||| |||||||||||||||| |||||||||||| | Sbjct 1473 GCAACCATTTATAGGTGGCACAAACTAGGGGGTAGCGACTGTTTATTAAAAACACAGGGC 1414 Query 372671 TCCGCTAAGTTGTAAAACGATGTATAGGGTCTGAC 372705 || || |||| | |||| |||||||||||||| Sbjct 1413 TCTGCAAAGTCAATAGACGAAGTATAGGGTCTGAC 1379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191297289085358