Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1270 158 1e-33 >seq1270 Length=21014 Score = 158 bits (174), Expect = 1e-33 Identities = 310/452 (69%), Gaps = 5/452 (1%) Strand=Plus/Minus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 || ||||| || || |||||| ||| ||||||||||||||| || |||||||||| Sbjct 10768 ACGCCAAACTTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGT 10709 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACT-TTAG 4366 |||||| |||||| |||| || ||||| | | ||||||| || || ||| | Sbjct 10708 GAAATAGATTCCATGAAATTGAATGGATTTTTAGTGTTGTAA-ATTCGTCCGACTCCCAA 10650 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 ||| | | || |||||| || ||||| ||||| | ||| |||| ||| || || Sbjct 10649 TTCTATCAATAGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCAT 10590 Query 4427 TCCAATTA-ATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTT 4485 |||| | ||| || |||| || | ||| || || || ||||| || || |||| Sbjct 10589 GCCAAGCATATC-AACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTT 10531 Query 4486 CTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATA 4545 | ||| || || | ||| | ||||| | |||||| | |||||||| | |||| | Sbjct 10530 CACGGATAATTTCGATGATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAA 10471 Query 4546 AACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTA 4605 || ||||| || || || || ||||| || | ||| |||||||| || || || | Sbjct 10470 GGCAGGCAAAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCA 10411 Query 4606 ATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGA 4665 || ||||| | || | || |||||||| || || | ||||| || |||| Sbjct 10410 GACCAGGCATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGA 10351 Query 4666 ATATGCCTTCTACGGCGGCAAACGCTACTAAT 4697 | || ||||| ||||| ||||| |||| |||| Sbjct 10350 AAATTCCTTCGACGGCAGCAAATGCTA-TAAT 10320 Score = 98.7 bits (108), Expect = 8e-16 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 ||| |||||||| | | ||| | ||| || || || ||||| || || ||||| || Sbjct 7291 TACCTGAACTTCCTGGCTAAAACGTTCAACCAAATTCTCGTTAACAATGCCGTCTGATGC 7232 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 ||||||||| |||||||| ||||| || || | | ||| ||||| | | ||| ||| Sbjct 7231 TGCAAAAAAGGCCAAAACGTGAGAAATGAAATGCCTTTCACTTGGCTTCAATGTTTCCCA 7172 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 || || |||||||| | || || |||||||| ||||| ||||| ||||| || Sbjct 7171 GTCTTTCATATCTTTAGAAAGGTCGACCTCTTCAACGGTCCAGAACGAGGCTTCAGC 7115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426629286707081