Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq71022 630 1e-175 seq1270 188 1e-42 >seq71022 Length=3779 Score = 630 bits (698), Expect = 1e-175 Identities = 1285/1895 (68%), Gaps = 34/1895 (2%) Strand=Plus/Plus Query 76760 CTTTATTTTATTCTTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAG 76819 ||| | ||| ||||||| | ||||| ||||| | | | || |||||||| || | Sbjct 758 CTTCAATTTTGTCTTATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAA 817 Query 76820 ATAGTACATACCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTCAGTT 76878 ||| ||||| |||||||||| ||| ||| | ||| ||| | || || || || |||| Sbjct 818 ATAATACATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTT 876 Query 76879 TGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 76938 | |||| | || ||||| | |||||| || | ||||| ||||||||||| |||| Sbjct 877 TTCCATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTC 936 Query 76939 CTCTATCAGCCGCCATTTTTATAATGGTCT-TTTGA--GGAATTTCCCAAATAGTTTTGA 76995 ||| ||| || ||||||||||| || | ||||| | || |||||||| |||||| Sbjct 937 CTCGATCTGCAGCCATTTTTAT---GGCCACTTTGACCGAAACTTCCCAAACGGTTTTGT 993 Query 76996 AAACTTGTTTGATATCATCTGGAAGGTTTG---TATTTTGAATGGAACCACCATCTGATA 77052 | | || || ||| ||||| | | |||||||||||||||| || | | Sbjct 994 ACAATTCACGAATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCA 1053 Query 77053 TAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGAT 77112 |||| |||| || |||||||| | ||| || | | || |||||| || |||| | || Sbjct 1054 AAATTTTATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAAT 1113 Query 77113 GAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTAT 77172 || |||| || | || ||||| || || | || | ||| |||| | || || | Sbjct 1114 GATGATTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGT 1173 Query 77173 ATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTG 77232 | ||||| | |||||||||||||| | |||||| ||||| ||||| |||||||| |||| Sbjct 1174 AAGGTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTG 1233 Query 77233 CCACCAATAAACTATTTCTGAGACCATGTGTTCTG---ATTTTATCTTTTAGATATTTCC 77289 ||| | || |||||||| ||| |||| || ||||| | || | | | || Sbjct 1234 CCAAAAGTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCTTCAATTCATCCC 1290 Query 77290 AATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAG 77349 ||| ||| | ||||| ||| ||||| | || || || | ||| || |||||| Sbjct 1291 AATTCCATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAA 1350 Query 77350 CATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTT 77409 | | || | ||| || ||||| | ||||| |||| || | |||| ||| |||| Sbjct 1351 CTGGGCAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTT 1410 Query 77410 CCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATAC 77469 |||| || || |||||||| || |||||||| | | || | ||| ||||| | Sbjct 1411 CCAAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGC 1470 Query 77470 TATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAA 77529 | || | || ||| | | || ||||| ||||| || | |||||||| ||||| |||| Sbjct 1471 TCTCGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAA 1530 Query 77530 TAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTA 77589 | || | ||||||| |||| || || |||||||||| || |||||| | || | || | Sbjct 1531 TGGGACGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAA 1590 Query 77590 TAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAA 77649 | |||||||| | |||| | || ||| || || || | ||| ||||||| Sbjct 1591 TGATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAA 1650 Query 77650 A---TCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTA 77706 | | || ||| |||||||||| ||||| || || || || | |||||| || || | Sbjct 1651 ACGTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAA 1710 Query 77707 CCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGC 77766 | |||| | | ||||| | ||||| ||||| | || || ||||| || || | Sbjct 1711 CTTCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTC 1770 Query 77767 CCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCC 77826 | | |||||||||||| ||| | || || | ||| || || || ||| | || || | Sbjct 1771 CAATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTAC 1830 Query 77827 CGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATT 77886 | ||||||| || ||||| ||||| | ||||| | | || || ||| Sbjct 1831 CCGTTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGAA 1890 Query 77887 TGTATCGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACAT 77946 | | || | ||| |||||||||| || || | |||||| || || ||||| | Sbjct 1891 TAAAACGACCTTCTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTGT 1950 Query 77947 CATCCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTA-ACT 78005 | | | |||||||| |||| ||||||||||| | || ||| ||| ||| ||| Sbjct 1951 CGTGTAGACCAGGGCACTCATGAGGGCACATCAA-----ACTCCACAT-TTCATTAGACT 2004 Query 78006 CG-----TTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTAT 78060 || || |||||| | ||| || ||||| || || | ||||| ||| || | || Sbjct 2005 CGACCCTTTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTC 2064 Query 78061 GTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 |||||| || || ||||| || || | || || ||||| | || || ||||| | Sbjct 2065 CTTCTTCCTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAG 2124 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGG 78180 |||| ||||| || || | | | ||||||| |||||||| ||||| || | || | | Sbjct 2125 GTTCAAGATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAG 2184 Query 78181 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAG 78240 | || || || || |||| ||||||||| | | || || || | || || || || | Sbjct 2185 CCGTATTGTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGG 2244 Query 78241 AAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCT 78300 |||||| |||| | || |||||| || || || ||||| ||||| | Sbjct 2245 CGATATAAGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATT 2304 Query 78301 TAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCA 78360 |||||| ||| || || | ||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 2305 TAGATACTAGCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCA 2364 Query 78361 T-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTC 78419 | || || ||||| || | |||| ||| || || || | || ||| ||||| Sbjct 2365 TCGTCAATAAGAAGCAAGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTA 2423 Query 78420 GGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCT 78479 || || ||||| || || | |||||| | || || || || ||||| || || || Sbjct 2424 GGCGACGCATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCA 2483 Query 78480 ATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACC 78539 |||||| |||||| ||||| ||||| | ||||||||||||||| || | || || Sbjct 2484 ATGTCCTCCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACA 2543 Query 78540 GTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 78599 || || || |||||||| || ||| |||||| ||||| || || ||||| ||| Sbjct 2544 ACTTTCCCCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTG 2603 Query 78600 TATGAAAAGTCTCTCTCGTAAATAATAACAGAATT 78634 || ||| || | |||||||| || | ||||| Sbjct 2604 TAGCCAAAATCACGATCGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 188 bits (208), Expect = 1e-42 Identities = 369/540 (68%), Gaps = 9/540 (2%) Strand=Plus/Minus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 || |||||||| || || || ||||| ||||| || |||||||| | ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| |||| |||||||| | || |||||| | | ||| |||||| | Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGT 48029 ||||| || ||||||||||| |||||| | ||| | || |||||||| || | | Sbjct 10639 AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCATA 10580 Query 48030 TTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCAC---TATT 48086 | |||||||| || || || | || || ||||| || ||||| | ||| || | Sbjct 10579 TCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGC-TTCACGGATAAT 10521 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 |||||| | | |||| | ||||| | | || | ||||| | || ||| Sbjct 10520 TTCGATGATTC--TTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCA 10463 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 || || || || | |||||||| | | ||| | |||||| || ||||| ||||| ||| Sbjct 10462 AAGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGC 10403 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 || || |||||||| || ||||| || || | || ||| ||| ||||| || ||| Sbjct 10402 ATAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCT 10343 Query 48267 TCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC-TTC--GTTGTGTATCCAC 48323 || ||||| |||||||| ||| | ||||||||| |||| ||| || |||||| Sbjct 10342 TCGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGGCGTTCTGACTGCATATCCAT 10283 Query 48324 CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 | |||||||| |||||||| || ||||| || | || || | ||||| || ||| Sbjct 10282 TGAATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATAGA 10223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693967557896480