Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq71022 684 0.0 seq1270 168 1e-36 >seq71022 Length=3779 Score = 684 bits (758), Expect = 0.0 Identities = 1294/1890 (68%), Gaps = 24/1890 (1%) Strand=Plus/Plus Query 75355 CTTTATTTTATTCTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAG 75414 ||| | ||| ||||||| | || || ||||||| | ||||||||||| || | Sbjct 758 CTTCAATTTTGTCTTATCGACGGTAAATTGAATGGCATTAACGGCTGGTTTTGTTCGCAA 817 Query 75415 ATAGTACATACCAGTTTTTAGACCCAGACT-CCATCCGTAGAAATGCATGCTTGTTAGTT 75473 ||| ||||| |||||||||| ||| ||| | ||| ||| | || || || ||||||| Sbjct 818 ATAATACATTCCAGTTTTTAAACC-AGATTTCCAGCCGAAAAAGTGAATTGAGGTTAGTT 876 Query 75474 TGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTC 75533 | |||| | || ||||| | |||||| || | ||||| ||||||||||| |||| Sbjct 877 TTCCATAATTGGGCTCGGCGACATGAATGTTGAATGACTGGGACTGATCGATGAATGCTC 936 Query 75534 CTCTATCAGCCGCCATTTTTATAATGGTCT-TTTGA--GGAATTTCCCAAATAGTTTTGA 75590 ||| ||| || ||||||||||| || | ||||| | || |||||||| |||||| Sbjct 937 CTCGATCTGCAGCCATTTTTAT---GGCCACTTTGACCGAAACTTCCCAAACGGTTTTGT 993 Query 75591 AAACTTGTTTGATATCATCTGGAAGATTTG---TATTTTGAATGGATCCGCCATCAGATA 75647 | | || || ||| ||||| | | ||||||||||||| ||| || | | Sbjct 994 ACAATTCACGAATGTCAAATGGAATTTCTTCAATATTTTGAATGGAACCGTTATTGGCCA 1053 Query 75648 TAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGAT 75707 |||| |||| || || ||||| | ||| || | | || |||||| || |||| | || Sbjct 1054 AAATTTTATTTTTCATATCATCGTCCCATAAATCGCGTTCAGTTAAATCTTTAAGCAAAT 1113 Query 75708 GAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTAT 75767 || |||| |||| || ||||| || || | || | |||| |||| | || || | Sbjct 1114 GATGATTGACAACCTGGAATTCACCCGATAGGACACGTCGATTGTAGACGTTTGATGTGT 1173 Query 75768 ATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTG 75827 | ||||| | |||||||||||||| | |||||| ||||| ||||| || ||||| |||| Sbjct 1174 AAGGTTCAAATGATTCATTGTTTCCGAGAATTTGTGCAGTCGAAGCGGTTGGCATTGGTG 1233 Query 75828 CCACCAATAAACTATTTCTGAGACCATGTGTTCTG---ATTTTATCTTTTAGATATTTCC 75884 ||| | || |||||||| ||| |||| || ||||| | || | | | || Sbjct 1234 CCAAAAGTAGGGAATTTCTGATACC---TGTTTTGGCAATTTTCTGCTTCAATTCATCCC 1290 Query 75885 AATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAG 75944 ||| ||| | ||||| |||| ||||| | || || || | ||| || || ||| Sbjct 1291 AATTCCATAAATCTGTTGGTTTTTTGTCCCACATGTCATACTGCAAAATGCCTTTACTAA 1350 Query 75945 CATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCT 76004 | | || | ||| || || || || || || |||| || | ||| ||| || | Sbjct 1351 CTGGGCAGCCTTCATAAGTCTCATAGGTGCCTTCAATTTCGGCCAATTCAGTACTAGCTT 1410 Query 76005 CTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGAC 76064 | || ||||| |||||||| || |||||||| | | || | ||| ||||| | Sbjct 1411 CCAAGGCACCATAATAAATCGTCTCGAAAATTTGTTGGTTCAATAATTGGGCTTCTTCGC 1470 Query 76065 TATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAA 76124 | || |||| ||| | | || ||||||||||| || | |||||||| ||||| |||| Sbjct 1471 TCTCGTAAGGGTAACGCATTAGGATAAATGCATCAGCCATGCCCTGAACGCCAATTCCAA 1530 Query 76125 TAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTA 76184 | || | ||||||| |||| || || ||||||||| || || ||| | || | ||| | Sbjct 1531 TGGGACGATGTCTCATATTCGATGTTCTAGCTTCTGGGATCGGATAAAAGTTGACATCAA 1590 Query 76185 TAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAA 76244 | |||||||| | |||| | || ||| || || || | ||| ||||||| Sbjct 1591 TGATTTTATTCAAATTTTTCGTTACGGTTTTTGTGACTTCTTTCAATTTCTTGAAATCAA 1650 Query 76245 A---TTTTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTA 76301 | |||| ||| | ||||||||||| | || || || || | |||||| ||||| | Sbjct 1651 ACGTTTTTTCATTAGTAACAAACATATTCAAGGCAATTGAGGCCAAATTACAGACGGCAA 1710 Query 76302 CCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTC 76361 | |||| | | | ||||| | ||||| || || | || || || || || |||| Sbjct 1711 CTTCATCTTTACTTGAATATTCGACAATCTCTGTACACAAGTTGCTGCATTTAATGGTTC 1770 Query 76362 CAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTC 76421 ||| |||||||||||| ||| ||||||| | ||| || || || | | | || || | Sbjct 1771 CAATATTTTGTTGGTTAGATTTTCTGTTACAAGCGTCTTTGTAGAGCATATAAGGCGTAC 1830 Query 76422 CAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTAT-TATAGAT 76480 | ||||||| || ||||| ||||| | ||||| | | || || || | || Sbjct 1831 CCGTTTCAACTTGAGATTCAATAATGGCAAACCAGAGGTCCTGTGCCTTAATCTGGCGA- 1889 Query 76481 TTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACA 76540 | | || ||| ||||||||||||| || || |||||| || || ||||| Sbjct 1890 ATAAAACGACCTTCTTTTTCATATTGTGTGTACAATTTTTCAAACTCCTCACCCCATGTG 1949 Query 76541 TCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACC 76600 || | | |||||| || |||| || |||||||| |||| ||| || ||| Sbjct 1950 TCGTGTAGACCAGGGCACTCATGAGGGCACATCAAACTCCACATTTCATTAGACTCGACC 2009 Query 76601 CGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660 | || |||||| | ||| || ||||| || || | ||||| ||| || | || | |||| Sbjct 2010 CTTTGCATAAACAAATCTGGGATCCAAAGGGCGAAAAATAAATCACGAGCCCTTCCTTCT 2069 Query 76661 TCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCT 76720 || || || ||||| || || | ||||||||||| | || || ||||| ||||| Sbjct 2070 TCCTTGCCCGTATTTTTCTTCAAGTCTAGGAACTCGAAAACGTCCCCGTGCCAAGGTTCA 2129 Query 76721 AGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTG 76780 ||||| || || | | | || |||| |||||||| ||||| || | || | || || Sbjct 2130 AGATAAATGGCAAAAGCGCCAGGTCTCTTATTACCACCCTGGTCCACGTAACGAGCCGTA 2189 Query 76781 TTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATA 76840 || || || |||| ||||||||| | | ||| || || | || || || || | ||| Sbjct 2190 TTGTTGTACACTCGCAACATTGGTACTAGGCCATTTGAAATGCCGTTAGTACCGGCGATA 2249 Query 76841 TAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAG 76900 ||| |||| || |||||| || | |||||| ||||| ||||| |||||| Sbjct 2250 TAAGTTCCCTTGGCCCGAATACAGTGAACATTTAGGCCAATTCCGCCTGCAGATTTAGAT 2309 Query 76901 ATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTT 76959 | ||| ||||| | ||||| || || || |||||||| ||||||||||| |||| || Sbjct 2310 ACTAGCGCACACTGCTTCAAGGTATCGTAAATGCCCTCAATACTATCATCACTCATCGTC 2369 Query 76960 AAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGA 77019 || ||||| || | |||| ||| || || || | || |||||||||||| || Sbjct 2370 AATAAGAAGCAAGAT-GACAACTGAGGACGAGGGGTGGCCGCTGCAAACAATGTAGGCGA 2428 Query 77020 TGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC 77079 ||||||||||| | |||||| | || || || || ||||| | | || || || Sbjct 2429 CGCATGAGTGAAATAACGTTCAGACAACAGGTTATACGTCTCAATGGCAGAGTCAATGTC 2488 Query 77080 CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT 77139 | |||||| |||||||| || | ||||||||||||||| || || || ||| || Sbjct 2489 CTCCCCATGAATGCCTACAGCTACTCTCATCAACATATGCTGTGGACGCTCCACAACTTT 2548 Query 77140 ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 77199 || || |||||||| || ||| |||||| ||||| || || ||||| ||||| Sbjct 2549 CCCCTTAATCTTCAACAAATAAGATCGTTCCAAGGTTTTGAAGCCGAAATAATTGTAGCC 2608 Query 77200 AAAGTCTCTTTCGTAAATAATAACCGAATT 77229 ||| || | |||||||| || ||||||| Sbjct 2609 AAAATCACGATCGTAAATGATGGCCGAATT 2638 >seq1270 Length=21014 Score = 168 bits (186), Expect = 1e-36 Identities = 365/542 (67%), Gaps = 13/542 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 || || ||||| || || || ||||| ||||| || |||||||| | ||| ||| | Sbjct 10759 TTCTGATATTCGCCGACTTTCTTTTCGAAGAAATTCGTCTTGCCTTCTAGTGAAATAGAT 10700 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||| || ||||| || || |||||| | | ||| |||||| | Sbjct 10699 TCCATGAAATTGAATGGATTTTTAGTGTTGTAAATTCGTCCGACTCCCAATTCTATCAAT 10640 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 ||||| || ||||||||||| ||||| | ||| | || |||||||| || | | Sbjct 10639 AGTCTGTCAGCAACGAATTCAATATATTCTGACATAAGTTTGCAATTCATGCCAAGCATA 10580 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCAT--CCGATATTA 46576 | || |||| || || || | || || |||||||| ||||| | | |||| | Sbjct 10579 TCAACTGGTAAGGCATCTGTTAAGAATTCCTGTTCAATTTCAACAGCTTCACGGATAATT 10520 Query 46577 TCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 |||||| | | |||| | ||||| || | || | ||||| | || |||| Sbjct 10519 TCGATG--ATTCTTTCTTTTGTTGGTTTCTGGACTAAGTAACGGAACATAAGGCAGGCAA 10462 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 | || || || | |||||||| | | ||| | |||||| || ||||| || ||||||| Sbjct 10461 AGTCGCAGTGTAATCCTTCATCACGAGAAATGAGTTCGTTTGAGAATGTCAGACCAGGCA 10402 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 | || ||||| || || ||||| || || | || ||| ||| ||||| || |||| Sbjct 10401 TAAGGCCACGTTTCTTAAGCCAGAAAATGGAAGCAAAACTTCCGCTGAAGAAAATTCCTT 10342 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCA---CC 46813 | || || || ||||| | || | ||||||||| ||| | || ||| | || || Sbjct 10341 CGACGGCAGCAAATGCTATAATGCGTTCTCCGTAATTGG---CGTTCTGACTGCATATCC 10285 Query 46814 TTTG---AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 ||| ||||||||| ||||| || || ||||| || | || || | ||||| || | Sbjct 10284 ATTGAATAGCCCAATCGGCCTTCTTTTTGACACATGGAAGGGTCTCAACTGCATTGAATA 10225 Query 46871 GA 46872 || Sbjct 10224 GA 10223 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||| | |||||||| || |||| | ||| |||||||||||||| | || || || || Sbjct 7473 ATCTCTTACATATGTGTCGATTAGCAAACTGTACATTTCTGAATGCACATTCTCCATTGC 7414 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCT 46987 || || ||||| || ||||||||||||||||||| || Sbjct 7413 AATTTGGAATCCATAGAAACATCTTGCTTCAGTAACCT 7376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712214719458240