Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_031098.1 Length=40749 Score E Sequences producing significant alignments: (Bits) Value seq74773 237 4e-58 seq65050 80.6 7e-11 >seq74773 Length=3040 Score = 237 bits (262), Expect = 4e-58 Identities = 301/409 (74%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 593 TGTTCAAGTCTTTGTGATAAGTCT---TGGTCTTTCCCTAAAGTTCCGTTGGGTTACTTT 649 |||||| || ||||| | ||||| ||| ||| ||||||| ||| | || ||||| Sbjct 1409 TGTTCA--TCATTGTG-TCAGTCTGCATGGGCTTATCCTAAAGCACCGCTTGGATACTTC 1465 Query 650 GCTCCAACGTATCCGCAGATCCGAGATATCTTTTTCCCTACGATTGATGAAGTAGCTTTC 709 || || || ||||||||||| || ||||| || || || |||||||| ||||| || ||| Sbjct 1466 GCACCGACCTATCCGCAGATTCGGGATATTTTCTTTCCAACGATTGAGGAAGTGGCATTC 1525 Query 710 GATTGGGGATTGAAGACAAAGATCTATGAATCTAACAAAGAAGTTGATCTTTACTATGGC 769 || ||||| || || | | || | ||||| ||||| ||||| ||| |||| || || Sbjct 1526 GACTGGGGCTTAAATGTAGACATTAAAGAATCCAACAAGGAAGTCGATGTTTATTACGGT 1585 Query 770 CGCCAATATCGAAGCACAATTATTTGCCGATCAATGGAAAAGCCCAATACTATTGTAGGT 829 | || || || | || || |||||||| || |||||||| || | || ||||| || Sbjct 1586 AGTCAGTACCGGACAACCATCATTTGCCGCTCGATGGAAAAACCGCAGACCATTGTCGGG 1645 Query 830 TTTAAGATTGGTCATGCGC--TGATTGATGAGCTTGATGTGATGACAAAGGTCAAGGCTC 887 |||||| | | | |||| | | ||||| ||||| ||||||| |||| || || | Sbjct 1646 TTTAAGGT--ATTAAGCGCATTAGTCGATGAACTTGACGTGATGAACAAGGATAAAGCAC 1703 Query 888 AACAAGCTTGGCGTAAGATCATTGCTCGTATGCGATATAAACAAGCTGGTTTGTTGAACG 947 | | | |||||||| ||||||||||||||||| || | | | ||| || ||| Sbjct 1704 AGGTATCATGGCGTAAAATCATTGCTCGTATGCGTTACACCTACCCCGGTGCTTTAAACC 1763 Query 948 GTATTGATGTTGCAACAACGCCAGAGGGCTTTAAGTTCACTCATGAGCA 996 | ||||| ||||||||||| ||||||||||| ||||||||| ||||||| Sbjct 1764 GGATTGACGTTGCAACAACACCAGAGGGCTTCAAGTTCACTTATGAGCA 1812 Score = 127 bits (140), Expect = 5e-25 Identities = 216/309 (70%), Gaps = 8/309 (3%) Strand=Plus/Plus Query 1208 AACCATACAGATGAGGAAATAAGACCTAATGAGGCTTTACTCATTGGTATGGACTTCAAC 1267 || ||||| |||| ||||| | || ||| ||| || ||||| ||||| || ||| Sbjct 2079 AATCATACCGATGCTGAAATCCAATCTGGTGAACATTTGCTGATTGGCATGGATTTTAAC 2138 Query 1268 GTCTTGAAGATGGCAGCTGTTGTTTATGTGATTCGAGATGGCAAGCCAAGAGCTT-TAGA 1326 || |||| ||||| || | |||||||||||||| | || ||||| ||| | || Sbjct 2139 GTGCTGAAAATGGCCGCAGCGGTTTATGTGATTCGCCAGGGTGTGCCAAT-GCTACTTGA 2197 Query 1327 TGAGTTGGTCGGTGTGCGTGATACGCCAACAATGGCCGATCTATTAATTGAAAAG---TT 1383 |||| | || || | | |||||||| |||||||| | ||| || || || | Sbjct 2198 TGAGATCGTGGGCGCAAGGGATACGCCGACAATGGCGCA---ATTGATCAAAGAGCGCTA 2254 Query 1384 CCCAAACCATGAGATGACAGTTATCCCTGATGCGGCAGGCCAAGCTACTTCATCAAAAAA 1443 ||| |||| | || || | | || ||||| ||||||||||| |||||||||||||| Sbjct 2255 CCCGTTCCATCAAATAACCATCTTTCCAGATGCAGCAGGCCAAGCGACTTCATCAAAAAA 2314 Query 1444 GAGTAGCGAATCTGATCATGCAATCTTGAGACAGAAGGGCTTAAGGGTCGAAGTCAATTC 1503 ||||| ||||| || ||||| ||| ||||| | ||||| | | ||||| || Sbjct 2315 CAGTAGTGAATCAGACCATGCCATCCTGAGAGCGTCAGGCTTTAAACTTGAAGTAAACGG 2374 Query 1504 AACAAACCC 1512 |||||||| Sbjct 2375 CACAAACCC 2383 >seq65050 Length=6412 Score = 80.6 bits (88), Expect = 7e-11 Identities = 111/154 (72%), Gaps = 6/154 (4%) Strand=Plus/Plus Query 1505 ACAAACCCGAACATTAAAGACCGAATTAATGCAGTAAATGCTTTGATCTTAAATGGCAAT 1564 |||||||| || ||||||||| | ||||| || |||||| || | || || Sbjct 4 ACAAACCCAGCAATCAAAGACCGATTGAATGCGGTGAATGCTGCTATTTGCAACTCGAAA 63 Query 1565 GGTGAGCGAACACTCTTA---GTCAATACAAATAAATGCCCAAGACTCACAGAGACCTTT 1621 ||||| || | ||| || ||||| ||||||||||| ||| ||||| | || Sbjct 64 GGTGAACGCT---TGTTAAGGGTGAATACCAATAAATGCCCTAGAGCGACAGAAGCACTT 120 Query 1622 GAGCAGCAAGTTTATGACGATTTTGGAATGCCAG 1655 ||||||||||| ||||||||||| || ||||||| Sbjct 121 GAGCAGCAAGTCTATGACGATTTCGGGATGCCAG 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130150267467374