Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq36344 102 2e-16 seq144 102 2e-16 seq3660 100 7e-16 seq31860 91.5 3e-13 >seq36344 Length=11671 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | ||| | || || || || ||||||||||| |||| || || | Sbjct 894 GAGACGGAGGACCAAATGCAATGTTGATTCCTTCTGGATGTTGTAGTCGGACAAGGTACG 835 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || ||||| || || || || || || | | || ||||| | | ||||||||| Sbjct 834 TCCGTCTTCGAGTTGCTTGCCAGCAAAAATCAAACGTTGTTGGTCTGGGGGGATTCCTTC 775 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || ||||||||||| ||| ||| |||| | ||||||| || ||||| | || Sbjct 774 TTTGTCTTGAATTTTAGCTTTTACATTCTCAATTGTGTCTGACGGTTCGACTTCCAATGT 715 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| || || | |||||| ||||| | ||||| Sbjct 714 AATAGTTTTTCCAGTCAAAGTCTTGACGAATATTTGCAT 676 >seq144 Length=14776 Score = 102 bits (112), Expect = 2e-16 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||| | || ||||| |||||||| ||||| || | || || | Sbjct 14444 GAGACGGAGTACCAAATGCAATGTCGACTCCTTTTGGATATTGTAGTCTGACAATGTACG 14385 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||||| ||| ||||| || || | | ||| || || | | ||| ||||| Sbjct 14384 GCCATCTTCTAATTGTTTGCCGGCAAAAATCAAACGCTGTTGATCTGGAGGGATACCTTC 14325 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||||||||| ||| ||| | || | |||| || ||| ||||| | || Sbjct 14324 CTTATCTTGAATTTTAGCTTTAACATTTTCGATTGTGTCCGAGGGCTCGACTTCCAAGGT 14265 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || | || |||||||||| ||||| Sbjct 14264 GATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 14226 Score = 96.9 bits (106), Expect = 8e-15 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||| | || |||||||||||||| ||||| || | || || | Sbjct 14216 GAGACGGAGTACCAAATGCAATGTCGACTCTTTTTGGATATTGTAGTCAGACAATGTGCG 14157 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 |||||||| | ||||| || ||||| || | | ||| || || | | ||| ||| Sbjct 14156 GCCATCTTCCAATTGCTTT--CCAGCGAAAATCAAACGCTGTTGATCTGGAGGGATGCCT 14099 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||||||||| || ||| | || | | | || || ||| ||||| | Sbjct 14098 TCCTTATCTTGAATTTTAGCCTTTACATTTTCAATGGTATCCGAGGGCTCGACTTCCAAG 14039 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || |||||||| || | || |||||||||| ||||| Sbjct 14038 GTGATGGTTTTGCCAGTTAAGGTTTTCACGAAGATTTGCAT 13998 Score = 93.3 bits (102), Expect = 1e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | ||| | || ||||| ||||| || ||||| |||| ||||| | Sbjct 14672 GAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGACAAAGTGCG 14613 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | ||| |||||||| || | | |||||| || | | || ||||| Sbjct 14612 GCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGAATACCTTC 14553 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 || || || || || || || | || | | | ||||| ||| ||||| | || Sbjct 14552 TTTGTCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCTGAGGGCTCAACTTCCAAGGT 14493 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||||| || | ||| || ||||| | |||||| Sbjct 14492 GATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCAT 14454 >seq3660 Length=14069 Score = 100 bits (110), Expect = 7e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | ||| | || || || ||||| |||||||| ||| | || ||||| Sbjct 2509 GAGACGGAGGACCAAATGCAATGTCGATTCCTTTTGAATGTTGTAGTCGCCCAATGTTCT 2450 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| | ||| || || || || |||| | || || || | | |||||||| Sbjct 2449 GCCATCTTCCAATTGTTTGCCAGCAAAAATCAAGCGT-TGTTGATCTGGTGGGATTCCTT 2391 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| |||||||| || |||||| | || | | || ||| || ||||| | | Sbjct 2390 CCTTCTCTTGAATCTTAGCCTTGACATTTTCAATAGTATCCGAAGCTTCAACTTCCAATG 2331 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACCCTT 152113 | || || || || || | |||||| ||||||| ||||| |||||| Sbjct 2330 TGATTGTCTTTCCAGTCAAAGTCTTGACGAAGATTTGCATGCCACCCTT 2282 >seq31860 Length=14314 Score = 91.5 bits (100), Expect = 3e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAA-AGTTCTCC 151947 ||| ||||| | ||| | || ||||||||||| |||||||| || ||||| ||| | | Sbjct 1277 TCTTAGGACCAAATGCAATGTGGACTCTTTTTGAATGTTGTAGTC-GCTAAGTGTTTTGC 1219 Query 151948 CATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCT 152007 ||||||| | ||| || || || || | || ||||| || | | ||| ||||| | Sbjct 1218 CATCTTCCAATTGTTTGCCAGCAAAAATCAATCTTTGCTGATCTGGTGGGATGCCTTCTT 1159 Query 152008 TTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAA 152067 | || ||||| || ||||||| | || | ||||| | ||| ||||||| || | Sbjct 1158 TATCCTGAATCTTCAATTTGACATTTTCAATAGAATCTGAGCCCTCAGCTTCAAGTGTTA 1099 Query 152068 TAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| || || || || || | ||| | ||||| Sbjct 1098 TTGTTTTTCCGGTTAGGGTTTTAATGAATATTTGCAT 1062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152626942699947