Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq26050 105 9e-18 >seq26050 Length=12756 Score = 105 bits (116), Expect = 9e-18 Identities = 314/487 (64%), Gaps = 18/487 (4%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 || |||||||||| ||| || | |||| ||| || | ||||| || | | |||| Sbjct 2462 TTCAAAATTTGAACACGTCCTTCCTCATTGGGCAAACTGATTTCCATTTGGACCTCCATT 2521 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || |||| | | ||||||||||| | ||| ||||||| ||||| || |||| Sbjct 2522 CGTCCGGGTCGCATAAGAGCTTCGTCAATCATGTCCCGTCTGTTTGTCATGCCAATGACC 2581 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTACGGCG 156050 ||||| ||||| || ||| ||||| || ||||| | | || |||||||| |||| Sbjct 2582 AAAATATTGTTCAATTGTTCGACACCATCAATTTTGGCAAGCAACTGATTGACCACGGTA 2641 Query 156051 TCGTG------CGTGGCGTTATCA------CCGCGTTTTTTACACAGAGCATCTATTTCA 156098 || || || || | || || | | |||||| | ||||| |||||| Sbjct 2642 TCATGAACCCCAGTAGCCCCAGCAACCGATCCTCTTGCTTTACAAATGGCATCAATTTCA 2701 Query 156099 TCGAAGACGATAACGTGTAATCCGCTGGCTAAACCCAATTTNNNNNNNNNNNNNNNAGCC 156158 ||||| | || | || ||||| ||| ||||||| | || Sbjct 2702 TCGAAAATAATTATATGCAATCCACTGTTAGGACCCAATCTTTTTTCCTCCTCTTCGGCG 2761 Query 156159 TCTTGAAACAATCGTCTGACGTTAGCTTCCGATTCACCCACATATTTGTTTAATAATTCA 156218 ||| || ||||| | | || ||||| |||||||| || || |||| || | | | Sbjct 2762 TCTGCGAATAATCGACGAATATTTGCTTCAGATTCACCGACGTACTTGTCCAAAATCTGA 2821 Query 156219 GGACCGTTAACTATTTTGACGGGTCGTG---ATTTAAAAGCTTGAGCGATACAGCGAGCC 156275 ||||| ||||| ||||| || || | ||| || | || | | || |||||| Sbjct 2822 GGACCATTAACAATTTT--TGGCTCACGAGCATTCAACATATT-ACCAATTTGTCGAGCC 2878 Query 156276 ATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGTTTACAA 156335 || ||||||||||| |||||||| || || | || | ||||| | || || || Sbjct 2879 ATCAATGTTTTACCAGTTCCAGGAGGACCATAAAGTAAAATACCTTTGACGTGCTTGCAC 2938 Query 156336 CCTAATT 156342 || |||| Sbjct 2939 CCCAATT 2945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 666401812600920