Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq36344 141 2e-28 seq144 132 1e-25 seq31860 129 1e-24 seq3660 111 4e-19 seq25532 102 2e-16 >seq36344 Length=11671 Score = 141 bits (156), Expect = 2e-28 Identities = 154/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || |||||||| || || | || || ||| |||||| Sbjct 679 CAAATATTCGTCAAGACTTTGACTGGAAAAACTATTACATTGGAAGTCGAACCGTCAGAC 738 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct 739 ACAATTGAGAATGTAAAAGCTAAAATTCAAGACAAAGAAGGAATCCCCCCAGACCAACAA 798 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || || || || |||||||| ||| | || |||| |||| || ||| | Sbjct 799 CGTTTGATTTTTGCTGGCAAGCAACTCGAAGACGGACGTAC-CTTGTCCGACTACAACAT 857 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 ||| || ||||||||| ||||| Sbjct 858 CCAGAAGGAATCAACATTGCAT 879 >seq144 Length=14776 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || | || ||||| || || || | ||||| || || ||| Sbjct 12977 CAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACATTGGAGGTTGAGCCTTCCGAC 13036 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| ||| |||||||| || || ||||| ||||| || || |||||| Sbjct 13037 ACCATTGAAAACGTTAAAGCCAAGATTCAAGATAAGGAAGGTATCCCCCCAGATCAGCAA 13096 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || |||||||| | ||||||||| | || || | ||||||||| | Sbjct 13097 CGTTTGATCTTTGCTGGAAAACAATTGGAAGATGGACGTACCCTGTCAGATTATAACATT 13156 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || ||| ||||| Sbjct 13157 CAGAAAGAGTCGACATTGCAT 13177 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| |||||| | || || ||||| |||||| | || || || |||||| Sbjct 14457 CAGATTTTCGTTAAAACTTTGACTGGCAAAACTATCACCTTGGAAGTTGAGCCCTCAGAT 14516 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| |||||||||||||| || ||||| || ||||| Sbjct 14517 ACCATTGAAAACGTTAAGGCCAAGATCCAGGACAAAGAAGGTATTCCTCCAGATCAGCAG 14576 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || |||||||| ||||| | |||||||| | ||| | |||| || || | Sbjct 14577 CGTTTGATTTTCGCCGGTAAACAATTGGAAGATGGCCGCACTTTGTCCGACTACAATATT 14636 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || ||| ||||| Sbjct 14637 CAAAAGGAGTCGACATTGCAT 14657 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | || |||||||||||||| | || || ||| || || Sbjct 13317 CAAATTTTCGTCAAAACCTTAACCGGAAAAACGATCACATTGGAAGTCGAACCTTCGGAT 13376 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| ||||| || ||||||||||| || ||||| || ||||| Sbjct 13377 ACTATTGAAAACGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAGCAG 13436 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| | ||||||||| | ||| | | || || ||| | Sbjct 13437 CGTTTGATTTTCGCTGGAAAACAATTGGAAGATGGACGTACTTTGTCTGACTACAACATT 13496 Query 178104 CAAAAAGAATCAACACTGCAT 178124 || ||||| || || ||||| Sbjct 13497 CAGAAAGAGTCTACTTTGCAT 13517 Score = 118 bits (130), Expect = 3e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || ||||| | ||||||||||| ||||| | || || || ||| || Sbjct 13545 CAGATTTTTGTTAAAACATTGACAGGAAAAACCATCACTTTGGAAGTCGAGCCCTCGGAT 13604 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||| || ||||||||||| || ||||| || || ||| Sbjct 13605 ACTATTGAAAACGTTAAGGCCAAGATCCAAGACAAAGAAGGTATTCCTCCAGATCAACAA 13664 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || || || ||||| ||||| || | ||||||||| | || |||| | || || ||| | Sbjct 13665 CGTCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACGTAC-CTTGTCAGACTACAACAT 13723 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 ||||| || || ||| ||||| Sbjct 13724 TCAAAAGGAGTCGACATTGCAT 13745 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || ||||| |||||| | || || || ||| || Sbjct 13773 CAAATCTTCGTCAAGACATTGACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCGGAT 13832 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| || ||||| ||||| || ||||| ||||| || || || || Sbjct 13833 ACCATCGAGAACGTTAAGGCCAAGATCCAGGATAAGGAAGGTATCCCACCAGATCAACAG 13892 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| |||||||| | |||||||| | ||| | | || || || || Sbjct 13893 CGTTTGATTTTCGCAGGAAAACAATTAGAAGATGGCCGTACTTTGTCTGACTACAATATC 13952 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || ||| ||||| Sbjct 13953 CAAAAGGAGTCGACATTGCAT 13973 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| | || || ||||| |||||| | || || || ||| ||| Sbjct 14229 CAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCGGAC 14288 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || ||| || ||||| || || ||||| |||||||| || || || Sbjct 14289 ACAATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATCCCTCCAGATCAACAG 14348 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| ||||| | |||||||| | || | | || || || || Sbjct 14349 CGTTTGATTTTTGCCGGCAAACAATTAGAAGATGGCCGTACATTGTCAGACTACAATATC 14408 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || ||| ||||| Sbjct 14409 CAAAAGGAGTCGACATTGCAT 14429 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| | || || ||||| || || | || || ||| | || || Sbjct 10550 CAAATCTTTGTCAAAACATTGACCGGTAAAACCATAACTTTAGAAGTTGAAGGGTCTGAT 10609 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||| || || | ||| |||||||| || || ||||||||||| || || || ||| Sbjct 10610 TCCATTGAAAATATTAAAACCAAGATTCAAGATAAGGAAGGAATCCCACCAGATCAACAA 10669 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || ||||| ||||| || | ||||||||| || || ||||||| || | Sbjct 10670 CGCCTCATTTTCGCTGGAAAGCAATTGGAAGATGGACATACCCTATCCGATTACAATATT 10729 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||||||||| || || || |||| Sbjct 10730 CAAAAAGAATCGACGCTACA-CTTG 10753 Score = 105 bits (116), Expect = 2e-17 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| | || || ||||| |||||| | || || || ||| || Sbjct 14001 CAAATCTTCGTGAAAACCTTAACTGGCAAAACCATCACCTTGGAAGTCGAGCCCTCGGAT 14060 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || ||||| || || ||||| |||||||| || || || Sbjct 14061 ACCATTGAAAATGTAAAGGCTAAAATTCAAGATAAGGAAGGCATCCCTCCAGATCAACAG 14120 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| ||||| || | |||||||| | || | | || || || || Sbjct 14121 CGTTTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCTGACTACAATATC 14180 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| || ||| ||||| Sbjct 14181 CAAAAAGAGTCGACATTGCAT 14201 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| | ||||| || || || Sbjct 12749 CAGATATTCGTCAAGACATTGACTGGTAAGACCATCACTTTGGAGGTCGAGCCATCTGAT 12808 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||||||||| || ||||| ||||| || ||||| || || || |||||||| Sbjct 12809 ACGATCGAGAACGTAAAGGCTAAGATCCAGGATAAGGAAGGTATTCCACCAGACCAGCAG 12868 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| || ||||| ||| | ||||| ||| | || |||| |||| || || | Sbjct 12869 CGTTTGATCTTTGCTGGAAAGCAGTTGGAAGACGGACGTAC-CTTGTCCGACTACAATAT 12927 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTT 178130 || ||||| || ||| ||||| | ||| Sbjct 12928 TCAGAAAGAGTCTACATTGCATTTGGTT 12955 >seq31860 Length=14314 Score = 129 bits (142), Expect = 1e-24 Identities = 149/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||| | ||||| || || |||||||| || || || || | || ||||||| Sbjct 1065 CAAATATTCATTAAAACCCTAACCGGAAAAACAATAACACTTGAAGCTGAGGGCTCAGAT 1124 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || || |||||| ||||||||||| |||||||| ||||| || || |||||| Sbjct 1125 TCTATTGAAAATGTCAAATTGAAGATTCAGGATAAAGAAGGCATCCCACCAGATCAGCAA 1184 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| | || ||| ||| || ||| | Sbjct 1185 AGATTGATTTTTGCTGGCAAACAATTGGAAGATGGCAAAACACTTAGCGACTACAACATT 1244 Query 178104 CAAAAAGAATCAACACTGCAT 178124 |||||||| || ||| ||||| Sbjct 1245 CAAAAAGAGTCCACATTGCAT 1265 >seq3660 Length=14069 Score = 111 bits (122), Expect = 4e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | || ||||| || ||||| | || || ||| || || Sbjct 2294 CAAATCTTCGTCAAGACTTTGACTGGAAAGACAATCACATTGGAAGTTGAAGCTTCGGAT 2353 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| |||||||| || || ||||||||||| || || || ||| Sbjct 2354 ACTATTGAAAATGTCAAGGCTAAGATTCAAGAGAAGGAAGGAATCCCACCAGATCAACAA 2413 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | |||||||| || || | | ||| || ||| | Sbjct 2414 CGCTTGATTTTTGCTGGCAAACAATTGGAAGATGGCAGAACATTGGGCGACTACAACATT 2473 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| ||||| ||| ||||| Sbjct 2474 CAAAAGGAATCGACATTGCAT 2494 >seq25532 Length=5913 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| ||||| | |||||||| || || || || || || || | ||| Sbjct 1141 CAAATTTTCGTTAAAACATTGACAGGAAAGACAATAACGCTTGAAGTTGAGGCAGCCGAC 1082 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || | ||||| || |||||||| |||||||| ||||| || || || ||| Sbjct 1081 ACGATTGAAAGTGTCAAGGGTAAAATTCAGGATAAAGAAGGCATCCCACCAGATCAACAA 1022 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| | ||||| | ||||| | | ||||| || || Sbjct 1021 AGATTGATTTTTGCTGGCAAACAATTGGAAGACGCTAGGACATTGGGTGATTACAATATC 962 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || ||||| || ||| |||| |||| || Sbjct 961 CAGAAAGAGTCTACATTGCA-CTTGGTT 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202485700455858