Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chaoborus_20trivitattus_20[genbank_20GCA_5F001014815.1_202015-05-28] 80,757 sequences; 269,281,158 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq144 91.5 1e-13 >seq144 Length=14776 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||| |||||||||||||| || || Sbjct 13200 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCTTTCTGAATGTTATAATCTGAC 13141 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || | || || || || || |||| || || || || | ||| Sbjct 13140 AGGGTACGTCCATCTTCCAATTGTTTTCCAGCAAAGATCAAACGTTGCTGATCTGGGGGG 13081 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||| | | ||| | || |||| |||| | | |||||| | ||| || Sbjct 13080 ATACCTTCCTTAT-CTTGAATCTTGGCTTTAACGTTTTCAATGGTGTCGGAAGGCTCAAC 13022 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || |||| |||||| |||||||| |||||| Sbjct 13021 CTCCAATGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCATG 12973 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || |||||| ||||| || |||||||| Sbjct 14680 CCACCACGGAGACGGAGGACCAAATGCAATGTCGACTCCTTTTGAATATTGTAGTCGGAC 14621 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | || || |||||||| |||| ||||| || || | ||| Sbjct 14620 AAAGTGCGGCCATCTTCCAATTGTTTACCGGCGAAAATCAAACGCTGCTGATCTGGAGGA 14561 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCAC 41814 | | || |||||| ||| || ||| |||| || | | || | ||| || Sbjct 14560 ATACCTTCTTTGTCCTGGATCTTGGCCTT-AACGTTTTCAATGGTATCTGAGGGCTCAAC 14502 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| || |||| || || ||||||||||||||| Sbjct 14501 TTCCAAGGTGATAGTTTTGCCAGTCAAAGTTTTAACGAAAATCTGCATG 14453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461837321448400