Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22]
247,063 sequences; 314,170,746 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq131719 190 2e-43
seq15021 105 6e-18
seq193007 91.5 1e-13
seq67196 87.8 2e-12
>seq131719
Length=2163
Score = 190 bits (210), Expect = 2e-43
Identities = 340/494 (69%), Gaps = 12/494 (2%)
Strand=Plus/Minus
Query 105997 GGGTTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAATTTC 106056
|||||||| ||||| || || || |||||||||||||| || || |||||||||||||||
Sbjct 2047 GGGTTAGCGCCTTTACCTCCAGGGAACTCCCAATCGATATCGACGCCGTCAAAGAATTTC 1988
Query 106057 CACACTTGCAGAAATTCCTTAACCGAATCTACAAAA-----ACG-TTTCTTTTTTCAACA 106110
|| || || || || || || ||| | || ||| ||| ||| | || |||
Sbjct 1987 CAGGTCTGGAGGAAGTCTTTTACGGAAGCAACGAAACGGTCACGCTTTGTCTTGTCA--- 1931
Query 106111 TCGTGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTT 106170
||| | |||| | ||||| || | | ||||||||| || | ||||| | ||| ||
Sbjct 1930 --GTGAAGAAAA-AGAATGGATCAGCCAAAGTCCAGCCGCCGACGGAAGGCAAAATCTTG 1874
Query 106171 AAATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCG 106230
| | || | || ||| | ||||| || || || || ||||| || || |||
Sbjct 1873 AGGTCTGGTCTCGCCTGTTTCAACATCATCAGTTGGCCGAAGTTTCCTTTGTAAGGTTCG 1814
Query 106231 TTCCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCA 106290
||||| | || | || ||||| ||||| || | |||||||| || || |||||||
Sbjct 1813 TTCCATGAAGAAAGGCCCTTTTGTGGTTTCTGAAGAGCGGCCCAGGGGTCATGAATGGAC 1754
Query 106291 ACTTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTATC 106350
|||||||| |||||||| || |||| || | || | | | || || || |||
Sbjct 1753 ACTTTGAAGTCTTCGCGGCCGCTGCAGGAACGCTGGAGTGCCTGGAAACTGCCCTCAATC 1694
Query 106351 GTTTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAG 106410
|| || |||||| || || ||||| |||||||| || ||||| || |||||||||
Sbjct 1693 TCCTTCAGACTGTCGTTGATGCCGTCGCCTCCGCAGATCGGAATGAACCCGTACAACAAG 1634
Query 106411 TGTGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCAC 106470
|| | | ||| || | || || ||| ||||| || || | | ||||| |||||
Sbjct 1633 TGAGTCAGATTGGGGATCGGCACGCGGTCCACGGGGAACTTCCTCGGATACACTCCCCAT 1574
Query 106471 TCAACAAAGTACGC 106484
|| || ||||| ||
Sbjct 1573 TCTACGAAGTAAGC 1560
>seq15021
Length=1916
Score = 105 bits (116), Expect = 6e-18
Identities = 165/236 (70%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 28953 AGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 29012
||| | | |||||| |||||| | ||||| | ||||| || ||||| ||| || |
Sbjct 719 AGTTTTACAATGCAGATATTCGTAAAAACCCTAACGGGGAAGACCATCACCCTAGAGGTG 778
Query 29013 GAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCC 29072
|| | | || || | | || | || || ||| |||||||| ||| | ||
Sbjct 779 GAGGCTTCCGACACTATAGAAAATGTGAAAGCCAAGATTCAAGATAAAGAGGGTATTCCT 838
Query 29073 GTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCC 29132
||||||||| || | |||||||| || |||||| ||||||| | || | |
Sbjct 839 CCTGATCAACAACGATTGATCTTTGCTGGTAAACAATTGGAAGACGGCCGCACACTTTCT 898
Query 29133 GATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||||||||||||||| ||||||||||||||| |||||||| | | |||||||
Sbjct 899 GATTACAATATTCAGAAAGAATCTACTCTTCACTTGGTGTTAAGGCTCAGAGGAGG 954
>seq193007
Length=659
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021
||||| || || |||| ||| | || |||||||| || || ||| ||||| |
Sbjct 630 ATGCAGATCTTTGTCAAGACACTTACTGGCAAAACTATCACTTTAGAAGTTGAACCATCG 571
Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081
|| || | | || | || |||||| || ||||||||| | ||| ||| |||
Sbjct 570 GACACTATTGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 511
Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139
|| | ||||||||||| || |||||||| |||||| | | ||||| |||| ||||
Sbjct 510 CAGCGTCTTATCTTTGCTGGAAAACAACTTGAAGATGGACGCACACTAT--CCGACTACA 453
Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGT 29170
|||| ||||| |||||||| | ||| ||||
Sbjct 452 ATATCCAGAAAGAATCTACATTGCACTTGGT 422
>seq67196
Length=1848
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| | ||||| ||||| || ||||| || ||| ||| ||||| |
Sbjct 923 AATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACGATCACCTTGGAAGTCGAACCTTC 864
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
||| || | | | |||| || ||| || ||||||||| | ||| ||||||
Sbjct 863 AGATACTATCGAGAACGTTAAAGCTAAGATTCAGGACAAAGAAGGTATCCCCCCAGATCA 804
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|| | || || ||||| || || || ||||||| | ||| || | ||||||||
Sbjct 803 GCAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACTTTGTCAGATTACAA 744
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|||||| || ||||| ||| | || | || ||||| | || |||||
Sbjct 743 TATTCAAAAAGAATCCACTTTACATCTTGTTCTACGACTTCGCGGAGG 696
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427046245903265
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |