Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq131719 244 9e-60 seq174000 104 2e-17 >seq131719 Length=2163 Score = 244 bits (270), Expect = 9e-60 Identities = 401/570 (70%), Gaps = 11/570 (2%) Strand=Plus/Minus Query 102470 AGTTCGTCCAGCATGGCGCGCAACTCTTTCAGCAAAACAAGGTACGTGTCGGCGTCGCGC 102529 || |||| || ||| |||||| || |||| || || | ||| | || |||| | Sbjct 2122 AGCTCGTTCAACATCTCGCGCAGTTCCTTCATCAGAAGTACGTAGATTTCTCCGTC---C 2066 Query 102530 TCGCCGTTGCCGAGCGCCGGGTTGGCGCCCTTGCCGCCCGGAAACTCCCAATCGATGTCC 102589 | | ||||||| ||||| ||||| || || || || |||||||||||||| || Sbjct 2065 TTGGGCCTGCCGAGATTGGGGTTAGCGCCTTTACCTCCAGGGAACTCCCAATCGATATCG 2006 Query 102590 ACCCCGTCGAAAAACTTCCACACCTGCAAAAACTCTTTAACGGATTCGACAAACACGCGC 102649 || ||||| || || ||||| ||| | || ||||| ||||| | || || ||| | Sbjct 2005 ACGCCGTCAAAGAATTTCCAGGTCTGGAGGAAGTCTTTTACGGAAGCAACGAA-ACGGTC 1947 Query 102650 -CGCTTGTCCGCGTC-GTGCATGAAATAGAACGGGTCGGACAGCGTCCAGCCGCCAATGG 102707 ||||| | ||| ||| | |||| |||| || || | || ||||||||||| | || Sbjct 1946 ACGCTTTGTCTTGTCAGTGAA-GAAAAAGAATGGATCAGCCAAAGTCCAGCCGCCGACGG 1888 Query 102708 ACGGCAGGATTTTCAAATGCGGGTTTGCCAGCTTGGCCGCCATCAACTGGCCAAAGTTGC 102767 | |||| || || | | || | ||| | || | ||||| ||||| ||||| | Sbjct 1887 AAGGCAAAATCTTGAGGTCTGGTCTCGCCTGTTTCAACATCATCAGTTGGCCGAAGTTTC 1828 Query 102768 CTTTGTAGGGCTCGTTCCATGCGGATACGCCCTTTTGCGGCTTTTGTATGGCGGCCCACG 102827 ||||||| || |||||||||| || | ||||||||| || || || | |||||||| | Sbjct 1827 CTTTGTAAGGTTCGTTCCATGAAGAAAGGCCCTTTTGTGGTTTCTGAAGAGCGGCCCAGG 1768 Query 102828 GGTCGTGGATAGCGACCTTAAAGTCTGCGCGGCCTTTGCACGAGCGCTGCAGCGCTTCAA 102887 |||| || || | || || |||||| ||||||| |||| || ||||| || || | | Sbjct 1767 GGTCATGAATGGACACTTTGAAGTCTTCGCGGCCGCTGCAGGAACGCTGGAGTGCCTGGA 1708 Query 102888 AACTGCCGGGAATGGTCTTGAGCGCGTCGTTTAGCCCGTCGCCGCCGCAAATCGGGATGA 102947 ||||||| ||| ||| || |||||| | |||||||| ||||| ||||| |||| Sbjct 1707 AACTGCCCTCAATCTCCTTCAGACTGTCGTTGATGCCGTCGCCTCCGCAGATCGGAATGA 1648 Query 102948 AGCCGTACAGCAGATGGGACAGGTTGGGCAGCGGCACTTTGTCCACCGGAAA--GCCGCG 103005 | ||||||| || || | ||| ||||| | |||||| |||||| || || || || Sbjct 1647 ACCCGTACAACAAGTGAGTCAGATTGGGGATCGGCACGCGGTCCACGGGGAACTTCCTCG 1588 Query 103006 GCCGTACACGCCCCACTCTACGAAATACGC 103035 | ||||| ||||| |||||||| || || Sbjct 1587 G--ATACACTCCCCATTCTACGAAGTAAGC 1560 >seq174000 Length=6590 Score = 104 bits (114), Expect = 2e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 29094 ACCAGCGGGCGTGTTGCTGCCACGGCGCGTCGTCGGGTTCCCAATCCTTCAGACCGCCGT 29153 |||| || ||||||| | |||||| ||| ||| ||||||||| || |||||||||| Sbjct 2964 ACCATCGTGCGTGTTCTTCCCACGGTATGTCATCGTTTTCCCAATCTTTAAGACCGCCGT 3023 Query 29154 CGCAGCAAAAGCACCGCGTCTTGTCGCCCTGGCCAGTGTAAAAGAATCCGGCCTCGGCCA 29213 | || ||||||| |||||||| || || || || |||||||| ||||||||||| | Sbjct 3024 CACAATAAAAGCATTTGGTCTTGTCACCTTGTCCTGTATAAAAGAAGCCGGCCTCGGCTA 3083 Query 29214 ACTCTTCGGG 29223 | ||||| || Sbjct 3084 AATCTTCCGG 3093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420987743636108