Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq131719 203 3e-47 seq131720 104 2e-17 seq15021 100 3e-16 >seq131719 Length=2163 Score = 203 bits (224), Expect = 3e-47 Identities = 340/489 (70%), Gaps = 2/489 (0%) Strand=Plus/Minus Query 65531 gggTTGGCGCCCTTGCCGCCCGGAAACTCCCAGTCCACGTCCAGGCCGTCGAACAGCTTC 65590 ||||| ||||| || || || || |||||||| || | || | |||||| || | ||| Sbjct 2047 GGGTTAGCGCCTTTACCTCCAGGGAACTCCCAATCGATATCGACGCCGTCAAAGAATTTC 1988 Query 65591 CACGTCTGCAGAAACTcgcgcgccgactcgacgaacgcgcggcgcgcgctcgcgTC-GTG 65649 || ||||| || || || | || | ||||| | ||| || ||| ||| Sbjct 1987 CAGGTCTGGAGGAAGTCTTTTACGGAAGCAACGAAACGGTCACGCTTTGTCTTGTCAGTG 1928 Query 65650 CATGTGATAAAACGGATCGGACAGGGTCCAGCCGCCGATGGAGGGCAGCACGCGCAGGTG 65709 | | | | || ||||| | || ||||||||||||| ||| |||| | |||| Sbjct 1927 AA-GAAAAAGAATGGATCAGCCAAAGTCCAGCCGCCGACGGAAGGCAAAATCTTGAGGTC 1869 Query 65710 CGGGTGCGCCTTCTTGATGGCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCA 65769 || ||||| || | |||||| ||||||||||| || ||||| || ||| |||| Sbjct 1868 TGGTCTCGCCTGTTTCAACATCATCAGTTGGCCGAAGTTTCCTTTGTAAGGTTCGTTCCA 1809 Query 65770 CGCGGTCACGCCCTTTTGCGGCTTCTGCACGGCCGCCCACGGGTCGTGCACCGCCAGCTT 65829 | | | ||||||||| || ||||| | || ||||| ||||| || | | || || Sbjct 1808 TGAAGAAAGGCCCTTTTGTGGTTTCTGAAGAGCGGCCCAGGGGTCATGAATGGACACTTT 1749 Query 65830 GAAGTCGTCGCGGCCCGCGCACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTT 65889 |||||| |||||||| ||| || ||||| || |||| ||| |||||| | || ||| Sbjct 1748 GAAGTCTTCGCGGCCGCTGCAGGAACGCTGGAGTGCCTGGAAACTGCCCTCAATCTCCTT 1689 Query 65890 GAGGCTGTCGTTGATGCCGTCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGT 65949 || ||||||||||||||||| || ||||| ||||| | ||| ||||||| || || || Sbjct 1688 CAGACTGTCGTTGATGCCGTCGCCTCCGCAGATCGGAATGAACCCGTACAACAAGTGAGT 1629 Query 65950 GAGGTTGGGCACGGGCACCTTGTCGGCGGGAAAGTCGCGCCCGTACACGCCCCACTCGAC 66009 || ||||| | ||||| ||| |||| || | | | ||||| ||||| || || Sbjct 1628 CAGATTGGGGATCGGCACGCGGTCCACGGGGAACTTCCTCGGATACACTCCCCATTCTAC 1569 Query 66010 GAAGTAGGC 66018 |||||| || Sbjct 1568 GAAGTAAGC 1560 >seq131720 Length=1042 Score = 104 bits (114), Expect = 2e-17 Identities = 199/291 (68%), Gaps = 2/291 (1%) Strand=Plus/Minus Query 65147 ACGCCGGTCCAGCCGCGCCCGTACATGGCCACGCCGAGCACGATCTTGTCGGCGGGCGCG 65206 || ||||||||||| || ||||||||||| || || | ||| ||||| | | | | Sbjct 363 ACACCGGTCCAGCCACGTCCGTACATGGCAACACCAACCACAATCTTCTTAGGATTCACA 304 Query 65207 CCCTGCGCCAACAGCCGGCGCACCGCGCCGTCGGCGGTGTAGGGCTCGTCGGGCCGCCAC 65266 || |||||||||| ||| || || | ||||| | ||| | ||| |||| Sbjct 303 CCTTGCGCCAACAAGTATTTCACGCCGAAATCAGTCGTGTAAGTCTCCTTCGGCTGCCAA 244 Query 65267 GACGGCGCGTACAGCGCGGTCTGGTGGCCCAGCTCGGTGGTGGACCACGCCCCCTTGAAG 65326 || || |||||||| | | |||||| || || |||||||||| |||||||| Sbjct 243 GATGGAGCGTACAGAGAAGCCTGGTGACCAAGAGTATCATTGGACCACGCTCCCTTGAAA 184 Query 65327 TCGTAGCTCATCAAAAAGATGCGGTCGAGCGAGCGGTGCGC-GCGCCCGTAGTCCACGAC 65385 ||||||||||| || || ||| |||| | | ||||| ||| | ||| || ||||| Sbjct 183 TCGTAGCTCATGAAGAATATGTGGTCCATGTATTTCTGCGCTGCG-CTGTAATCGACGAC 125 Query 65386 GGCGATCTTGTCGTCGCCGGCGCCGATGGCGCTGGTCAGCTCGTACGTCCT 65436 ||||||||| || || | |||||| |||| |||||| |||| Sbjct 124 TTGGATCTTGTCCCAACCAGCACTGATGGCAGACGTCAACTCGTATTTCCT 74 >seq15021 Length=1916 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| |||||||||||||| || ||||| || ||||||||| | || || || || | Sbjct 727 AATGCAGATATTCGTAAAAACCCTAACGGGGAAGACCATCACCCTAGAGGTGGAGGCTTC 786 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | ||| | || | || |||| || |||||||| || || | || || Sbjct 787 CGACACTATAGAAAATGTGAAAGCCAAGATTCAAGATAAAGAGGGTATTCCTCCTGATCA 846 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| | |||| || || ||||| |||| |||| ||||| || || ||||| Sbjct 847 ACAACGATTGATCTTTGCTGGTAAACAATTGGAAGACGGCCGCACACTTTCTGATTACAA 906 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 || ||||| || | || || || | ||||| Sbjct 907 TATTCAGAAAGAATCTACTCTTCACTTGGTGTT 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513628054984880