Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq15021 127 3e-24 seq67196 104 3e-17 seq174000 98.7 1e-15 >seq15021 Length=1916 Score = 127 bits (140), Expect = 3e-24 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| || ||||| ||||| || | |||||||||||| ||||| ||||| ||| Sbjct 954 CCTCCTCTGAGCCTTAACACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCAGAA 895 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || || |||||||| |||||||| ||||||| ||| ||||| |||||| Sbjct 894 AGTGTGCGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGATCAGGAGGA 835 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || ||||||||||| ||| || ||| || || Sbjct 834 ATACCCTCTTTATCTTGAATCTTGGCTTTCACATTTTCTATAGTGTCGGAAGCCTCCACC 775 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTA 146281 ||||| ||||| || || || |||| ||||| | |||||| |||||| || Sbjct 774 TCTAGGGTGATGGTCTTCCCCGTTAGGGTTTTTACGAATATCTGCATTGTA 724 >seq67196 Length=1848 Score = 104 bits (114), Expect = 3e-17 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| || || | ||||||||| |||||||| ||||| |||||||| Sbjct 696 CCTCCGCGAAGTCGTAGAACAAGATGTAAAGTGGATTCTTTTTGAATATTGTAATCTGAC 755 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| | || || || || || |||||||||||||||| | |||||||| || || Sbjct 756 AAAGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGGG 815 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| || || |||||||||| ||| ||| Sbjct 816 ATACCTTCTTTGTCCTGAATCTTAGCTTTAACGTTCTCGATAGTATCTGAAGGTTCGACT 875 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || | ||||| ||||| || || || ||||| | ||| || |||||| Sbjct 876 TCCAAGGTGATCGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCATT 923 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||| | ||| |||||||||||||| ||||| || || || || || | | ||| || Sbjct 485 TACTAGATGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGGGTACGCCCATCTTC 544 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||| ||||||||||||| ||| ||||| || || || || ||||| |||||||| Sbjct 545 AAGTTGTTTGCCAGCAAAAATCATTCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCTTG 604 >seq174000 Length=6590 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 23979 GGATTGTGTCATTACTTTTTGAATAAAATCTTTGCCTTTTACAAGTTTAACATAATCACA 24038 || || ||| | ||| |||| | ||||||| || |||||||| | | ||| |||| Sbjct 2896 GGCTTCTGTGTTAACTCTTTGGACGTAATCTTTACCCTTTACAAGCTGGAGATAGGCACA 2955 Query 24039 TTTATCAAACCATCTTGCGTGTTGTATCCAAGGA---TCATCGTCTGTTTCCCATTTATT 24095 | | ||||||| |||||||| | ||| || ||||||| ||||||| | || Sbjct 2956 TCGACTGAACCATCGTGCGTGTTCTTCCCACGGTATGTCATCGT---TTTCCCAATCTTT 3012 Query 24096 TAAACCACCATCACAATAAAAGCATTTAACTTTATCACTTTTTCCAGTATAAAAGAATCC 24155 | ||| || ||||||||||||||||| || |||| || ||| ||||||||||| || Sbjct 3013 AAGACCGCCGTCACAATAAAAGCATTTGGTCTTGTCACCTTGTCCTGTATAAAAGAAGCC 3072 Query 24156 AGCTTCTGCTA 24166 || || |||| Sbjct 3073 GGCCTCGGCTA 3083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741230176712960