Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq174000 147 2e-30 seq131720 114 1e-20 seq131719 86.0 5e-12 >seq174000 Length=6590 Score = 147 bits (162), Expect = 2e-30 Identities = 324/480 (68%), Gaps = 18/480 (4%) Strand=Plus/Minus Query 13160 CGGTCCCGCTCACCCCAAATACGCCCATGAAGCTGCTCGAGTCAAGAGTTTTCACAACTG 13219 |||||| | |||||||||||||| ||||| || || ||| || || | | || Sbjct 3175 CGGTCCGGAACACCCCAAATACGCATCGGAAGCCGCCCGCATCAGCAGCTTCAAAGATTG 3116 Query 13220 GCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACACTGG 13279 ||| | | ||| |||| ||| || | | || || ||||| ||||| || || || Sbjct 3115 GCCTAGATCTATCCGTCAGAAACCGGAAGATTTAGCCGAGGCCGGCTTCTTTTATACAGG 3056 Query 13280 CTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGCCGGA 13339 | |||||||| || || ||||| |||||||||||||| | ||||||||||| || Sbjct 3055 ACAAGGTGACAAGACCAAATGCTTTTATTGTGACGGCGGTCTTAAAGATTGGGAAAACGA 2996 Query 13340 AGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGCTAGT 13399 || |||| |||||| | || | | |||||||| || || ||||| | ||||| || Sbjct 2995 TGACATACCGTGGGAAGAACACGCACGATGGTTCAGTCGATGTGCCTATCTCCAGCTTGT 2936 Query 13400 CAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCGTGTT---ACCCGGTGA 13456 ||||||| ||| ||||| || | ||| | ||| ||||||||| || | | | ||| Sbjct 2935 AAAGGGTAAAGATTACGTCCAAAGAGTTAACACAGAAGCCTGCATGATCAATTCTGATGA 2876 Query 13457 GA---ACACTACCGTGTCAACAGCCGCGCCAG-TGTCCGAGCCTATACCTGAGACAAAAA 13512 || | || | | || | ||| | ||| || |||| || | || || Sbjct 2875 GACCGAAGCTTCAGGATCTGCCGCCCCCGCAGCACCCCCAGCC-CCCCCAGCCACGCAAG 2817 Query 13513 TT---GAAAAAG-----AGCCCCAAGTGGAAGATTCGAAACTGTGCAAGATATGCTACGT 13564 || ||||||| | | || | || ||||| |||||||| || ||||| ||||| Sbjct 2816 TTCCGGAAAAAGAAGAAAATCTCA--TAGACGATTCCAAACTGTGTAAAATATGTTACGT 2759 Query 13565 AGAAGAGTGCATCGTGTGCTTCGTACCGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGC 13624 | ||| ||| | | || | || ||||| ||||||||||| ||||| |||||||| Sbjct 2758 TGGAGAACGCAACATAGTATTTATTCCCTGCGGCCACGTGGTGGCTTGTGCGAAGTGTGC 2699 >seq131720 Length=1042 Score = 114 bits (126), Expect = 1e-20 Identities = 281/418 (67%), Gaps = 10/418 (2%) Strand=Plus/Minus Query 6371 ATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACC 6430 || || ||||||||||||||||| || | |||||| ||||| || |||||| || Sbjct 456 ATTTCTCTGTAGTCCACCACACCATCTTGCCAAGTACCTTTAACAGGACCCGTTGCATTG 397 Query 6431 CCACTAAACAGATTGT--TGTTCGTGTAATTCGT-CACACCCGACCACCCCCTGCCGTAC 6487 ||| | || |||||| ||| | | ||| ||||| | ||| || | |||||| Sbjct 396 CCAGTGAAAGGATTGTCACCTTCAT---AACCGTGGACACCGGTCCAGCCACGTCCGTAC 340 Query 6488 ATAGCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAACAAACGCCTCAAC 6547 || || || || ||||| | ||| | ||||||| || |||||| ||| Sbjct 339 ATGGCAACACCAACCACAATCTTCTTAGGATTCACACCTTGCGCCAACAAGTATTTCACG 280 Query 6548 GCAAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGG 6607 | || || || ||||| | || | | | ||| || || | ||||||| || ||| Sbjct 279 CCGAAATCAGTCGTGTAAGTCTCCTTCGGCTGCCAAGATGGAGCGTACAGAGAAGCCTGG 220 Query 6608 TAGCCCAGATCCGTCA-TCGACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTA 6666 | || ||| ||| | |||||||| |||||| |||||||| |||| | ||| |||| Sbjct 219 TGACCAAGA-GTATCATTGGACCACGCTCCCTTGAAATCGTAGCTCATGAAGAATATGTG 161 Query 6667 GTCGAGATACTGTTGGCACTG-TTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGC 6725 ||| | || | | || ||| |||| ||||| || | |||||||| ||||| | | Sbjct 160 GTCCATGTA-TTTCTGCGCTGCGCTGTAATCGACGACTTGGATCTTGTCCCAACCAGCAC 102 Query 6726 TGATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACAT 6783 ||||||| |||||||| || ||| || || | | | ||||||| |||||| Sbjct 101 TGATGGCAGACGTCAACTCGTATTTCCTTCCAGTTTCCGCAGAGAGCTCGTTCAACAT 44 >seq131719 Length=2163 Score = 86.0 bits (94), Expect = 5e-12 Identities = 194/289 (67%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 7048 CATCAGCTGGCCAAAATTACCCTTATACGGCTCGTCGTACGCCTCCACACCCTTTTGTGG 7107 |||||| ||||| || || || || || || |||| | | | ||||||||||| Sbjct 1847 CATCAGTTGGCCGAAGTTTCCTTTGTAAGGTTCGTTCCATGAAGAAAGGCCCTTTTGTGG 1788 Query 7108 TTTCTGTACGGCGCCCCACAAATCGTGTATACTCACTTTGAAATCGTCTCGGCCCGCGCA 7167 |||||| | ||| |||| || || || ||||||||| || || ||||| ||| Sbjct 1787 TTTCTGAAGAGCGGCCCAGGGGTCATGAATGGACACTTTGAAGTCTTCGCGGCCGCTGCA 1728 Query 7168 CGATCTTTGCAACGCTTCAAACGACCCCGGCACCTGTTTCAAGGCGTCGTTGAGTCCGTC 7227 || | || | || | || ||| | || |||| |||||||| ||||| Sbjct 1727 GGAACGCTGGAGTGCCTGGAAACTGCCCTCAATCTCCTTCAGACTGTCGTTGATGCCGTC 1668 Query 7228 TCCCCCGCAAATGGGCACAAATCCGTACAGCAAATGGCTGAGATTGGGCACGGGCACCTT 7287 || ||||| || || | || ||||||| ||| || | |||||||| | ||||| Sbjct 1667 GCCTCCGCAGATCGGAATGAACCCGTACAACAAGTGAGTCAGATTGGGGATCGGCACGCG 1608 Query 7288 GTCTGCGGGAAACTGCCGTCCG-TACACACCCCACTCCACAAAGTACGC 7335 ||| |||| |||| || || | ||||| ||||| || || ||||| || Sbjct 1607 GTCCACGGGGAACTTCC-TCGGATACACTCCCCATTCTACGAAGTAAGC 1560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393885596843323