Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq131719 190 2e-43 seq174000 107 1e-18 seq67196 93.3 3e-14 seq15021 87.8 1e-12 >seq131719 Length=2163 Score = 190 bits (210), Expect = 2e-43 Identities = 343/493 (70%), Gaps = 10/493 (2%) Strand=Plus/Minus Query 91459 GGATTAGCGCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTC 91518 || |||||||||||||| || || || |||||||| ||||| || |||||||| |||||| Sbjct 2047 GGGTTAGCGCCTTTACCTCCAGGGAACTCCCAATCGATATCGACGCCGTCAAAGAATTTC 1988 Query 91519 CAAACTTGCAAAAATTCTTTAACCGAATCAACGAACACGTT---TCTTCGT-TTGACATC 91574 || || | || ||||| || ||| ||||||| ||| | ||| || ||| || Sbjct 1987 CAGGTCTGGAGGAAGTCTTTTACGGAAGCAACGAA-ACGGTCACGCTTTGTCTTGTCA-- 1931 Query 91575 GTGCATAAAATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAA 91634 ||| | |||| |||| || || | |||||||||||| |||| ||| || |||| || | Sbjct 1930 GTGAAGAAAA-AGAATGGATCAGCCAAAGTCCAGCCGCCGACGGAAGGCAAAATCTTGAG 1872 Query 91635 ATGCGGGTTGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTT 91694 | || | ||| || ||| | || || ||||| || |||||||| ||||| Sbjct 1871 GTCTGGTCTCGCCTGTTTCAACATCATCAGTTGGCCGAAGTTTCCTTTGTAAGGTTCGTT 1812 Query 91695 CCAAGCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAAC 91754 ||| | || | || ||||||||||| || | || ||||| || || || ||||| || Sbjct 1811 CCATGAAGAAAGGCCCTTTTGTGGTTTCTGAAGAGCGGCCCAGGGGTCATGAATGGACAC 1752 Query 91755 TTTAAAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGT 91814 ||| || || ||||| || |||| || || || | | ||||| || || Sbjct 1751 TTTGAAGTCTTCGCGGCCGCTGCAGGAACGCTGGAGTGCCTGGAAACTGCCCTCAATCTC 1692 Query 91815 TTTGAGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATG 91874 || || ||||| | || ||||||||||| || || || || |||||||||| || Sbjct 1691 CTTCAGACTGTCGTTGATGCCGTCGCCTCCGCAGATCGGAATGAACCCGTACAACAAGTG 1632 Query 91875 GGACAAATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCG-TACACGCCCCATT 91933 | || ||| || | |||||| ||| | || || || | || | ||||| ||||||| Sbjct 1631 AGTCAGATTGGGGATCGGCACGCGGTCCACGGGGAACTT-CCTCGGATACACTCCCCATT 1573 Query 91934 CAACAAAGTACGC 91946 | || ||||| || Sbjct 1572 CTACGAAGTAAGC 1560 >seq174000 Length=6590 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20075 TTAATCACGCACGCTTTATTCACAACATTTTGCACATAATCACGCCCTTTGACAAGCAGC 20134 || |||| ||| |||| | ||| |||| || ||||| || || |||||| | Sbjct 2885 TTGATCATGCAGGCTTCTGTGTTAACTCTTTGGACGTAATCTTTACCCTTTACAAGCTGG 2944 Query 20135 AAGTATCCACAGTTACTAAACCAACGTGCGTGTTGTTCCCATGGAATGTCATCATTTTCC 20194 | || |||| ||| ||||| |||||||||| |||||| || |||||||| |||||| Sbjct 2945 AGATAGGCACATCGACTGAACCATCGTGCGTGTTCTTCCCACGGTATGTCATCGTTTTCC 3004 Query 20195 CAATCTTTAAGGCCGCCATTGCAATAAAAACACAAAGTTTTATCACCGCGCGACGTATAA 20254 ||||||||||| ||||| | |||||||| || || || ||||| | |||||| Sbjct 3005 CAATCTTTAAGACCGCCGTCACAATAAAAGCATTTGGTCTTGTCACCTTGTCCTGTATAA 3064 Query 20255 TAAAATCCCGCTTCGGCCAATTCATCGGG 20283 | || || || ||||| || || || || Sbjct 3065 AAGAAGCCGGCCTCGGCTAAATCTTCCGG 3093 >seq67196 Length=1848 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||||| || ||||||||||| || || ||||| | | || | |||||| Sbjct 258 ACCAGATGAAGGGTGGATTCTTTTTGGATATTATAGTCAGATAGGGTGCGGCCATCTTCA 317 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||||| || ||| |||| || | ||||||||| || | ||||||||||| | Sbjct 318 AGCTGTTTTCCAGCAAAGATCAGACGTTGTTGATCTGGCGGAATACCTTCCTTATCCTGA 377 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 || | | || ||||| | | ||| |||||| ||||| ||| | ||||| |||| Sbjct 378 ATCT-TGGCTTTGACATTTTCAATGGTGTCAGATGGCTCAACTTCTAGAGTGATAGTTTT 436 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| ||||| ||||| || ||||| Sbjct 437 ACCAGTCAAGGTTTTAACAAAGATCTGCAT 466 >seq15021 Length=1916 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || || | |||| |||||| || |||||||| ||||| ||||| || | Sbjct 954 CCTCCTCTGAGCCTTAACACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCAGAA 895 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | |||||||||||||| || ||| |||| | || ||||||||| || Sbjct 894 AGTGTGCGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGATCAGGAGGA 835 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || || ||||| ||| | | || || || | | | | |||||| | ||| Sbjct 834 ATACCCTCTTTATCTTGAATCT-TGGCTTTCACATTTTCTATAGTGTCGGAAGCCTCCAC 776 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 || | ||||||| | || || || | |||||||| || || |||||| | ||||| Sbjct 775 CTCTAGGGTGATGGTCTTCCCCGTTAGGGTTTTTACGAATATCTGCATTGTAAAACT 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378201764749935