Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq168888 630 6e-176 seq67196 138 1e-27 seq159217 104 2e-17 >seq168888 Length=4095 Score = 630 bits (698), Expect = 6e-176 Identities = 1212/1777 (68%), Gaps = 21/1777 (1%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || |||||||||||||| || || || || || || || | | |||||||||||| Sbjct 3213 TTATCAACTGTAAACTGTATAGCATTAGCAGCTGGCTTTGTTCTCAAATAATACATGCCG 3154 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224 || || |||||||| ||||| || ||||| || ||||| || ||||| || ||| | || Sbjct 3153 GTTTTAAGACCCATTTTCCAAGCATAAAAGTGAATCGATGTTAATTTACCGTAATTTGGT 3094 Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 || | |||| | || || |||||||| || || ||||| || || | |||||| | Sbjct 3093 TCAGCTACATGAATG--TTAAAAGACTGACTTTGGTCAATAAATGCACCCCTATCGGCAG 3036 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | || || | |||| ||||| || ||||| || || | || || | Sbjct 3035 CCATTTGAATTGTAGTTTTAACAGACACCTCCCAAACAGTCTTATATAGATCTCTTATTT 2976 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 || ||| || | ||| || | || | ||||| ||||||||||| || | |||||| | Sbjct 2975 CTTTCGGAATAGCTTCTATATTTTGTATTGACCCATTATTGTGTATTATAAGATTTTTCA 2916 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | || | ||||||| | | || ||||| | | |||| | || || |||| Sbjct 2915 TGTCTTCATCCCACAAATCTGCTTCAGTTAAATCACGCAATAAATGATGATTTACAACTT 2856 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | |||||||| ||||| || | | |||||| || || |||||||| ||||| || |||| Sbjct 2855 GGAACTCGCCAGACAAAACTCTTCTTTGGTATATATTTGATGTGAAAGGTTCAAATGATT 2796 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 ||||||| || || || ||||| || || || || ||||| || || || | || || | Sbjct 2795 CATTGTTACCAAGAATTTGAGCCGTGGATGCTGTTGGCATAGGAGCTAATAATAAAGAAT 2736 Query 22584 TTCTCAAGCCGTGCTTTGAAATT-TTACTCTTGA-GCATCGACCAGTCCCACAGATCGGA 22641 ||||||| || ||||| |||||| || || || | ||||| ||||| ||| || |||| Sbjct 2735 TTCTCAAACCATGCTTAGAAATTCTTTCTTTTAAAGCATC--CCAGTTCCAAAGGTCGGT 2678 Query 22642 CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTC 22701 || || ||| |||||| |||||||| || | || |||| | ||||| ||||| Sbjct 2677 GGGGGTT---TTGCTCCACATGTCGTATTGTAATATACCTTGACTGGATGGGCTTCCTTC 2621 Query 22702 GTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTA 22761 ||| || || || ||||| | | |||||||| || || || || | || ||||| Sbjct 2620 GTAAGTGTCATAAACCCCATACTTTTCTGCAAGTTCACAACTAGCTTCTAGTGCCCCGTA 2561 Query 22762 ATATATAGTCTCGAAGATTTTCTTGTTCAA--TTCGGCGGCGGCGACGCTTTCGTACGGC 22819 ||| || || || || |||| ||| | || ||| || | || | ||||| || | Sbjct 2560 ATAAATGGTTTCAAATATTTG-TTGATTAAGTTTCATCG-CTGCATCACTTTCATATGCA 2503 Query 22820 ATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTT 22879 || ||||||| || || | || || | || ||||| || || || || || | | Sbjct 2502 ATGCGCATCAAGACAAATGTATCTGCTAGCCCTTGAACACCAATTCCTATAGGCCTATGC 2443 Query 22880 TTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTC 22939 ||| ||| || | ||||||| || | ||||| |||| ||| || || | || Sbjct 2442 CTCATATTTGATTTTCTTGCCTCCGGGATCGGATAGAAATTAACATCAATGATTTTATTT 2383 Query 22940 AAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT 22999 |||||| || | |||||| || | | ||| | || | | || Sbjct 2382 AAGTTTTGAGTAATAATTTTGGTGACTTCTTTTAATTTATTAAAAT--TATATGTTTTAT 2325 Query 23000 TGTAC--AACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTT 23057 | ||||||| |||| | || || || || | ||| || || || || ||||| Sbjct 2324 CTTCATTAACAAACATGTTCAAAGCAATAGATGCTAAATTACACACCGCGACTTCGTCAG 2265 Query 23058 TGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGC 23117 |||||||| || || || || || |||| || ||||| ||||| ||||| || || Sbjct 2264 CTGACGTGTATTCAACGATCTCAGTGCATAAGTTACTACATTTTATAGTGCCTAAGTTCT 2205 Query 23118 TCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGA 23177 | ||||| ||||| | || || | || ||||| ||||| || || || ||||| || | Sbjct 2204 TTTGGTTACTTTTCCTGTTACAAGCGTCTTTGTAAAGCATATAGGGTGTTCCCGTTTCAA 2145 Query 23178 CCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGC 23237 | || | ||||| || ||| ||| | | || ||| || || ||| | | Sbjct 2144 CTTGGGCTTCGATTATGGCTTTCCATAAAACTTGGGCGCTGACCTGTTTCACAAAACGCT 2085 Query 23238 CTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGC 23297 ||||| ||||| | || || | || ||||| | || ||||||| || | | Sbjct 2084 TTTCTTTTTCGTATTGTTCATATAGATTTTCGAATTCATCTCCCCAACAGTCAGCTAATC 2025 Query 23298 CGGGCGATTGCATC-GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATA 23356 | || | | ||| |||||||| |||||||| | | |||||||| | | ||||| Sbjct 2024 CAGGACAAT-CATGAGGACACATAAGACTCCAGTCTTCATTTTTTTCAACTCTTTTCATA 1966 Query 23357 AAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCG 23416 ||||||||||||||||||| ||| || |||| || || || || || || |||||||| Sbjct 1965 AAAAGATCCGGTATCCATAAAGCATAAAACAACTCTCGAGCTCGTACTTCTTCTTTGCCA 1906 Query 23417 GTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACG 23476 ||||||||||| | || | ||| || || | ||| |||||||| ||||| | || || Sbjct 1905 GTGTTCTTTTTGAGGTCGAGAAATTCAAAAATGTCTGCATGCCAAGGCTCTAAATACACT 1846 Query 23477 GCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTAC 23536 ||||| || || || | ||||| || || ||||| || || | || ||||||||||| Sbjct 1845 GCAAAAGCTCCGGGGCGTTTATTTCCACCTTGATCTACATATCTTGCTGTGTTGTTGTAA 1786 Query 23537 ACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCT 23596 || || ||||| |||||||| ||||| || | || | ||| || | | || ||| Sbjct 1785 ACCCTAAGCATTGGCACGAGTCCGTTAGATACACCATTTGTGCCTGCGATATATGATCCT 1726 Query 23597 TTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCG 23656 || |||| | ||||||||||| || || || || | ||||| ||||| | ||| Sbjct 1725 TTAGCTCTGATACAGTGAACGTGGACTCCGATTCCACCAGCAGATTTAGATATAAGCGCA 1666 Query 23657 CATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAA 23716 |||||||| | ||| || || || || || || ||||| ||||| | || || | ||| Sbjct 1665 CATTGTTTTAAAGTATCATATATACCTTCAATACTGTCATCTTTCATAGCTACAAGAAAA 1606 Query 23717 CACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTA 23776 || || |||| ||| | || || || || |||||||| || ||||||||||| ||| Sbjct 1605 CAAGATGACAATTGTGGCCGTGGTGTGGCAGCTGAGAACAGGGTTGGGCTGGCGTGTGTA 1546 Query 23777 AAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGT 23836 || ||| | |||| | |||||| || | ||||| ||||| || || || || || Sbjct 1545 AAATATTTTTCAGACAGCAAATTGTAAGTATTTATGGCAGCATCTATATCTTCACCATGG 1486 Query 23837 ATACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 ||||| || | || | ||||| ||| | || |||| Sbjct 1485 ATACCAATAGATACTCTCATCAGCATATGCTGTGGTC 1449 >seq67196 Length=1848 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| || ||| |||| || |||||||||||| | || || ||||| || Sbjct 922 ATGCAGATTTTCGTGAAAACTTTGACTGGAAAAACGATCACCTTGGAAGTCGAACCTTCA 863 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| |||| | || | ||| | |||||| ||||| | || || || || Sbjct 862 GATACTATCGAGAACGTTAAAGCTAAGATTCA-GGACAAAGAAGGTATCCCCCCAGATCA 804 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || ||||| || |||||||||||| ||| || ||||| || Sbjct 803 GCAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAAGACGGCCGTACTTTGTCAGATTACAA 744 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| ||| | ||||| || || |||| | || |||| Sbjct 743 TATTCAAAAAGAATCCACTTTACATCTTGTTCTACGACTTCGCGGAGGTA 694 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || |||| || ||||| ||||| | || ||||| || || Sbjct 466 ATGCAGATCTTTGTTAAAACCTTGACTGGTAAAACTATCACTCTAGAAGTTGAGCCATCT 407 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | || ||| |||||||| | ||||| || || Sbjct 406 GACACCATTGAAAATGTCAAAGCCAAGATTCAGGATAAGGAAGGTATTCCGCCAGATCAA 347 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || ||||| |||||| | ||||| || | || ||||| Sbjct 346 CAACGTCTGATCTTTGCTGGAAAACAGCTTGAAGATGGCCGCACCCTATCTGACTATAAT 287 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 || ||||||||||| || ||||||||||| Sbjct 286 ATCCAAAAAGAATCCACCCTTCATCTGGT 258 >seq159217 Length=3482 Score = 104 bits (114), Expect = 2e-17 Identities = 125/169 (74%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 58320 CATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACA 58379 ||||||||||| || || || ||||| |||||||| || || || || || ||||| ||| Sbjct 2980 CATTACAACACAAAGAACCCATTTGACTTTATGAACCTAATTTCTCTGGAAGGCAAAACA 2921 Query 58380 AACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGGTAACAAG 58439 ||||| || ||||| |||||| | ||||| ||||||| || || ||| | ||| Sbjct 2920 AACTTCTTTGAAAAGAAAGTTGGGGAATACCAAAAATGGGGAGTCATG---GCAAACCCT 2864 Query 58440 TTGGAGGACGATATTTTCACTTTGGATGCTGCCTTTTAATGTGTACAAA 58488 | ||| || | |||||||||||||||| ||||| | | | |||| Sbjct 2863 CT---TGACAATGTATTCACTTTGGATGCTGAATTTTAGTTTCTTCAAA 2818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444389745198960