Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq168888 150 3e-31 seq38475 116 5e-21 >seq168888 Length=4095 Score = 150 bits (166), Expect = 3e-31 Identities = 346/508 (68%), Gaps = 11/508 (2%) Strand=Plus/Plus Query 97758 AAAGACATTGCTCGGTACGGTTTGAGAAACTCTTTGCTGGTGGCACCGATGCCCACGGCT 97817 ||||| ||| || | | ||||||||||| ||||| | | || || ||||| || || Sbjct 2709 AAAGA-ATTTCTAAGCATGGTTTGAGAAATTCTTTATTATTAGCTCCTATGCCAACAGCA 2767 Query 97818 ACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCGTTCACGTCAAACATGTAC 97877 |||| | ||| | |||| || |||||| |||||||| ||||| ||||| || ||| Sbjct 2768 TCCACGGCTCAAATTCTTGGTAACAATGAATCATTTGAACCTTTCACATCAAATATATAC 2827 Query 97878 CAGAGACGCACCCAGTCTGGAGAGTTTCAA-TTGACCAACGTGCACTTGGTTCGAGACTT 97936 || ||| | |||||| ||||| ||| ||| | | | || || | || || || Sbjct 2828 CAAAGAAGAGTTTTGTCTGGCGAGTTCCAAGTTGTAAATCAT-CATTTATTGCGTGATTT 2886 Query 97937 GGAACGGCT-CA-ATCTGTGGAACGATGACATGGCCCAGTTGATCATGTACAACAATGGG 97994 ||| | || || ||||| | || |||||| | | || || |||| |||||| Sbjct 2887 --AACTGAAGCAGATTTGTGGGATGAAGACATGAAAAATCTTATAATACACAATAATGGG 2944 Query 97995 TCCATTCAAAACATTACCATC-ATCCCGGAAGAGTTGCGCAGAA-TCTACAAGACTGTCT 98052 || || ||||| || | | | || ||| |||| | | ||| | || |||||||| | Sbjct 2945 TCAATACAAAATAT-AGAAGCTATTCCGAAAGAAATAAG-AGATCTATATAAGACTGTTT 3002 Query 98053 GGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTACATTGACC 98112 ||||| | | || || || | ||||||||||| || |||| | ||||||| Sbjct 3003 GGGAGGTGTCTGTTAAAACTACAATTCAAATGGCTGCCGATAGGGGTGCATTTATTGACC 3062 Query 98113 AGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACTTCGATAC 98172 | ||||| || || || | | || || || || | ||| || | || ||||| | Sbjct 3063 AAAGTCAGTCTTTTAACATTCATGTAGCTGAACCAAATTACGGTAAATTAACATCGATTC 3122 Query 98173 ACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACAAAGTCGG 98232 ||||||| || ||||| | ||| || || || |||||||| ||| ||||||||||| | | Sbjct 3123 ACTTTTATGCTTGGAAAATGGGTCTTAAAACCGGCATGTATTATTTGAGAACAAAGCCAG 3182 Query 98233 CCACCAATGCCATACCATTTACGGTGGA 98260 | | ||||| |||| ||||| || || Sbjct 3183 CTGCTAATGCTATACAGTTTACAGTTGA 3210 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 96825 GGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACGTTACACAGGGCGGC 96884 || || ||||||||||| || | ||||| | || |||| || || || || Sbjct 1763 GGACTCGTGCCAATGCTTAGGGTTTACAACAACACAGCAAGATATGTAGATCAAGGTGGA 1822 Query 96885 AATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGAC 96944 |||||||| || || ||| | || || || || || |||||||| || ||| ||||||| Sbjct 1823 AATAAACGCCCCGGAGCTTTTGCAGTGTATTTAGAGCCTTGGCATGCAGACATTTTTGAA 1882 Query 96945 TTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTAT 97004 ||| |||| | || ||| ||||| ||||| | |||||| | || ||||||||| Sbjct 1883 TTTCTCGACCTCAAAAAGAACACTGGCAAAGAAGAAGTACGAGCTCGAGAGTTGTTTTAT 1942 Query 97005 GCACTCTGGGTGCCAGATTTGTTCATGAA 97033 || | ||| | || ||| | || ||||| Sbjct 1943 GCTTTATGGATACCGGATCTTTTTATGAA 1971 >seq38475 Length=2156 Score = 116 bits (128), Expect = 5e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 70202 GATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCA 70261 || || || || |||| || |||||||||| |||||||| ||||||| || || Sbjct 1770 GACAGAAGAATGTTAATATGTGCATGGAATCCATCAGATTTGAGTAAAATGGCCCTTCCT 1711 Query 70262 CCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGA-TGGCAAATTGTCATGCTTAATGTA 70320 || ||||| ||||||||||| ||| | | | | | ||| || || ||||| || | || Sbjct 1710 CCATGTCATTGTTTGGCTCAATTTCA-TGTTGCCAGTGGAAAGTTATCATGTTTGTTATA 1652 Query 70321 TCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTT 70380 || || ||||| || ||||| || || ||||| ||||| || ||||| |||||| | | Sbjct 1651 CCAAAGAAGTGCTGATATGGGTCTAGGAGTACCATTTAATATAGCAAGTTATTCTCTTCT 1592 Query 70381 GACGCACATGATTGCTCA 70398 || ||||||||||| || Sbjct 1591 TACACACATGATTGCACA 1574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 738770596135880