Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq131719 269 2e-67 seq131720 138 9e-28 seq67196 107 2e-18 seq15021 102 7e-17 >seq131719 Length=2163 Score = 269 bits (298), Expect = 2e-67 Identities = 424/601 (71%), Gaps = 7/601 (1%) Strand=Plus/Minus Query 100685 GTCAACTCGTACGTTTTGCCCGTTTGCAGTTGTAGCTGGTCCAGCATCGCGCGCAATTCC 100744 ||||||||||| | | || |||| | |||| || || |||| |||||| |||| Sbjct 2155 GTCAACTCGTATTTCCTTCCAGTTTCCGCCGAGAGCTCGTTCAACATCTCGCGCAGTTCC 2096 Query 100745 TTCAGTAAAATGTTGTACGTGTCGGCGTCGCGCTCCCCGTTGCCAAGAGTCGGGTTGGCG 100804 |||| | || ||| | || |||| || |||| ||| | ||||| ||| Sbjct 2095 TTCATCAGAAGTACGTAGATTTCTCCGTCCTTGGGCC---TGCCGAGATTGGGGTTAGCG 2039 Query 100805 CCTTTGCCGCCCGGAAACTCCCAGTCAATGTCCACGCCGTCAAAAAACTTCCACACCTGC 100864 ||||| || || || |||||||| || || || ||||||||||| || ||||| ||| Sbjct 2038 CCTTTACCTCCAGGGAACTCCCAATCGATATCGACGCCGTCAAAGAATTTCCAGGTCTGG 1979 Query 100865 AAAAATTCCTTGACCGAGTCCACAAACACGCGC-CGTTTTTCCGCATC-GTGCATGAAAT 100922 | || || || || || | || || ||| | || ||| | || ||| | |||| Sbjct 1978 AGGAAGTCTTTTACGGAAGCAACGAA-ACGGTCACGCTTTGTCTTGTCAGTGAA-GAAAA 1921 Query 100923 AGAACGGGTCGGACAACGTCCAGCCGCCGATGGACGGCAGAATTTTGAGGTGCGGATTGG 100982 |||| || || | ||| ||||||||||||| ||| |||| ||| ||||||| || | | Sbjct 1920 AGAATGGATCAGCCAAAGTCCAGCCGCCGACGGAAGGCAAAATCTTGAGGTCTGGTCTCG 1861 Query 100983 CCAGCTTGGCCGCCATTAGCTGACCGAAATTGCCCTTGTACGGCTCGTTCCATGCGGACA 101042 || | || | ||| || || ||||| || || ||||| || |||||||||| || | Sbjct 1860 CCTGTTTCAACATCATCAGTTGGCCGAAGTTTCCTTTGTAAGGTTCGTTCCATGAAGAAA 1801 Query 101043 CGCCCTTTTGCGGTTTTTGTATTGCGGCCCAGGGATCGTGAATGGCGACTTTGAAATCTG 101102 ||||||||| ||||| || | ||||||||||| || ||||||| |||||||| ||| Sbjct 1800 GGCCCTTTTGTGGTTTCTGAAGAGCGGCCCAGGGGTCATGAATGGACACTTTGAAGTCTT 1741 Query 101103 AACGACCCTTGCAGGAGCGCTGCAGCGCTTCAAAACTGCCGGGAATGGTTTTGAGGGCGT 101162 || || ||||||| ||||| || || | |||||||| ||| || || || Sbjct 1740 CGCGGCCGCTGCAGGAACGCTGGAGTGCCTGGAAACTGCCCTCAATCTCCTTCAGACTGT 1681 Query 101163 CGTTGAGGCCGTCGCCGCCGCAAATGGGTATGAACCCGTACAACAGATGCGAGAGATTGG 101222 |||||| ||||||||| ||||| || || |||||||||||||||| || | ||||||| Sbjct 1680 CGTTGATGCCGTCGCCTCCGCAGATCGGAATGAACCCGTACAACAAGTGAGTCAGATTGG 1621 Query 101223 GCAGCGGCACTTTGTCTACCGGAAAATTGCGGCCGTACACGCCCCACTCTACAAAATACG 101282 | | |||||| ||| || || || || | ||||| ||||| ||||| || || | Sbjct 1620 GGATCGGCACGCGGTCCACGGGGAACTTCCTCGGATACACTCCCCATTCTACGAAGTAAG 1561 Query 101283 C 101283 | Sbjct 1560 C 1560 >seq131720 Length=1042 Score = 138 bits (152), Expect = 9e-28 Identities = 429/653 (66%), Gaps = 26/653 (4%) Strand=Plus/Minus Query 100112 TTCATAGCATTTAACAAGTCGCCGTTGTCGGCGTCGATTTCCCAAGCGAATAACCCGCCC 100171 ||||||||||| || | ||| || ||||| ||||| |||||||| ||||| || || ||| Sbjct 669 TTCATAGCATTCAATATGTCACCATTGTCCGCGTCAATTTCCCACGCGAACAAACCACCC 610 Query 100172 AATCCGTTTTGATCT-ACATAACTATTTTTTGCTAATACAGAATCGACACTGTCAAAAGA 100230 ||| ||| | ||| || || | ||| ||| || || | || ||| | | Sbjct 609 AATTTGTTATT-TCTGACGTATTTGCCTTTCTCTATAACTGATCTGGCATCGTCGTACGT 551 Query 100231 GATTAAATCGCCCTTGTCTTTGTTAAAAACGTAAGCCGCTTTAGCGACCGAATCAAATTT 100290 |||| ||| || || | || | || ||||| | ||||| || ||| |||| | | Sbjct 550 TATTAGATCTCCGGTGGCCTTCCTGAACACGTATGGCGCTTGTGCCACCTTATCATAATG 491 Query 100291 GTAA----ATGTACTTGTT-CAAT-TCGTTTTCAATTTGGCGATAATCGACAACGCCGTC 100344 ||| || | | | | || || | | | |||| | || || || || || || Sbjct 490 GTACTCCCATTTCCCAGCAGCTATATCATCTGCTATTTCTCTGTAGTCCACCACACCATC 431 Query 100345 TTCCCAAGTGCCGGTCACGGGCCCGGCAGCTGTGCCTGTGAAATAGTTGTCACCGTCATA 100404 || |||||| || | || || || | || |||| |||||| |||||||| ||||| Sbjct 430 TTGCCAAGTACCTTTAACAGGACCCGTTGCATTGCCAGTGAAAGGATTGTCACCTTCATA 371 Query 100405 GCCCGCCACGCCTGTCCAACCGCGGCCGTACATGGCAACGCCCACAATAATTTTGCGCGG 100464 || || || ||||| || || |||||||||||||| || || | ||| || || Sbjct 370 ACCGTGGACACCGGTCCAGCCACGTCCGTACATGGCAACACCAACCACAATCTTCTTAGG 311 Query 100465 GTCCACGCCCTGGTTCGTGAGCA---ATTTCACGGCGTGATCCGTGTTGTACAGCTCGTT 100521 | ||| || || || | || |||||||| || ||| || |||| ||| || Sbjct 310 ATTCACACCTTG---CGCCAACAAGTATTTCACGCCGAAATCAGTCGTGTAAGTCTCCTT 254 Query 100522 CGGGTTCCAACTCGGCGCGTAGAGAGTGGTTTGGTAGCCCAA----ATCGGTGTTTGACC 100577 ||| | |||| || ||||| |||| | |||| | |||| ||| || |||| Sbjct 253 CGGCTGCCAAGATGGAGCGTACAGAGAAGCCTGGT-GACCAAGAGTATC---ATTGGACC 198 Query 100578 AGGCGCCTTTAAAATCGTAGCTCATAAGAAATATTTTATCGAGAAGCTTTTGCGCAACGT 100637 | || || || |||||||||||||| | ||||| | || | || ||||| || Sbjct 197 ACGCTCCCTTGAAATCGTAGCTCATGAAGAATATGTGGTCCATGTATTTCTGCGCTGCGC 138 Query 100638 CGTACTGTACCACAGCAATTTTGTCATAGCCGGAACTGATTGCGCTTGTCAACTCGTACG 100697 ||| | || || || ||||| | || | |||||| || ||||||||||| Sbjct 137 TGTAATCGACGACTTGGATCTTGTCCCAACCAGCACTGATGGCAGACGTCAACTCGTATT 78 Query 100698 TTTTGCCCGTTT--GCAGTTGTAGCTGGTCCAGCATCGCGCGCAATTCCTTCA 100748 | | || |||| |||| |||| || || |||| |||||| |||||||| Sbjct 77 TCCTTCCAGTTTCCGCAG--AGAGCTCGTTCAACATCTCGCGCAGTTCCTTCA 27 >seq67196 Length=1848 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 || || || || || ||||||||||||||||| | || || | |||| |||| ||| Sbjct 720 TGTAAAGTGGATTCTTTTTGAATATTGTAATCTGACAAAGTACGGCCGTCTTCCAACTGC 779 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| || | ||||||||| ||| | || |||||||| ||| || Sbjct 780 TTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTGTCCTGAATCTTA 839 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | ||| |||||| ||| || ||| | ||| || ||||| || || Sbjct 840 GCTTTAACGTTCTCGATAGTATCTGAAGGTTCGACTTCCAAGGTGATCGTTTTTCCAGTC 899 Query 19019 AAAGTTTTGACAAAAATTTGCATTTTAAATCT 19050 |||||||| || ||||| |||||| | ||||| Sbjct 900 AAAGTTTTCACGAAAATCTGCATTATGAATCT 931 >seq15021 Length=1916 Score = 102 bits (112), Expect = 7e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || ||||||| | ||||||||||| ||| | ||||| || || |||||||||||||| Sbjct 957 TTACCTCCTCTGAGCCTTAACACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCA 898 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | | ||| | |||| |||| |||||||| ||| | || | || || ||||| Sbjct 897 GAAAGTGTGCGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGATCAGGA 838 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | |||||||| || ||| || ||| || | | | ||| ||| || |||| Sbjct 837 GGAATACCCTCTTTATCTTGAATCTTGGCTTTCACATTTTCTATAGTGTCGGAAGCCTCC 778 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTTAAATCT 19050 || | ||| ||||| || || |||| ||||| || || || |||||| |||| || Sbjct 777 ACCTCTAGGGTGATGGTCTTCCCCGTTAGGGTTTTTACGAATATCTGCATTGTAAAACT 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413324488003822