Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq67196 197 3e-45 seq15021 190 5e-43 seq193007 172 1e-37 >seq67196 Length=1848 Score = 197 bits (218), Expect = 3e-45 Identities = 171/212 (81%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| ||||| || |||||||||||||||||||| ||||||||||| || | || ||| Sbjct 27 AGTACAAGATGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGGGTGCGCCCATCT 86 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| ||||| ||||| || ||||| || || || || || || || ||||| Sbjct 87 TCAAGTTGTTTGCCAGCGAAAATCAGTCTCTGCTGGTCTGGGGGGATCCCCTCCTTATCT 146 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||||||||| || | || || || ||||||||||| |||||||| Sbjct 147 TGAATCTTGGCTTTTACATTCTCAATAGTGTCTGATGGCTCTACCTCTAGAGTAATAGTT 206 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| | ||||| ||||| |||||||| Sbjct 207 TTACCAGTCAAGGTTTTAACAAAGATCTGCAT 238 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||||||||| || |||||||||||||||||||| ||||||||||| || | || ||| Sbjct 483 AGTACTAGATGCAAAGTAGATTCTTTCTGAATATTGTAGTCAGATAGGGTACGCCCATCT 542 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || |||||||| ||||||||||| | ||||| || || || || || ||||| ||||| Sbjct 543 TCAAGTTGTTTGCCAGCAAAAATCATTCTCTGCTGGTCTGGGGGGATCCCTTCCTTATCT 602 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 ||||| || || || || ||||| | || || || || || || ||||||||||| Sbjct 603 TGAATTTTAGCCTTAACGTTTTCAATTGTGTCCGATGGCTCAACTTCAAGTGTAATAGTT 662 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||||||| ||||| ||||| |||||||| Sbjct 663 TTGCCAGTAAGGGTTTTAACAAAGATCTGCAT 694 Score = 179 bits (198), Expect = 8e-40 Identities = 165/209 (79%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || |||||||| || ||||||||||||||||| || | || ||||| Sbjct 258 ACCAGATGAAGGGTGGATTCTTTTTGGATATTATAGTCAGATAGGGTGCGGCCATCTTCA 317 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || |||||||||||||| || || | |||||||| || || || ||||| ||||||||| Sbjct 318 AGCTGTTTTCCAGCAAAGATCAGACGTTGTTGATCTGGCGGAATACCTTCCTTATCCTGA 377 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| ||||| |||||||| | ||| || || || || ||||| || ||||| ||| Sbjct 378 ATCTTGGCTTTGACATTTTCAATGGTGTCAGATGGCTCAACTTCTAGAGTGATAGTTTTA 437 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||||| ||||| |||||||| Sbjct 438 CCAGTCAAGGTTTTAACAAAGATCTGCAT 466 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || |||||||| || |||||||| |||||||| || || || | ||| | |||||| Sbjct 711 AGAACAAGATGTAAAGTGGATTCTTTTTGAATATTGTAATCTGACAAAGTACGGCCGTCT 770 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || | || |||||||||||||| || | ||| ||||| || || || |||||||| ||| Sbjct 771 TCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTGTCC 830 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| || || || | ||||| |||||| || || | || || || Sbjct 831 TGAATCTTAGCTTTAACGTTCTCGATAGTATCTGAAGGTTCGACTTCCAAGGTGATCGTT 890 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| | ||||| || || ||||||||| || Sbjct 891 TTTCCAGTCAAAGTTTTCACGAAAATCTGCATTATG 926 >seq15021 Length=1916 Score = 190 bits (210), Expect = 5e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| ||||| | || | || | |||||||||||||||||||| || ||||| Sbjct 954 CCTCCTCTGAGCCTTAACACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAATCAGAA 895 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 || || | |||||||| | |||||| |||||||| || | | |||||||||||||| Sbjct 894 AGTGTGCGGCCGTCTTCCAATTGTTTACCAGCAAAGATCAATCGTTGTTGATCAGGAGGA 835 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || || |||||||| |||||||| ||||| |||||||||| || ||| || || ||| Sbjct 834 ATACCCTCTTTATCTTGAATCTTGGCTTTCACATTTTCTATAGTGTCGGAAGCCTCCACC 775 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || ||||| || || || |||||||| |||||||||||| Sbjct 774 TCTAGGGTGATGGTCTTCCCCGTTAGGGTTTTTACGAATATCTGCATT 727 >seq193007 Length=659 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || ||||||||||||||||| ||||| ||||| ||||| || | || ||||| |||||| Sbjct 428 TGCAATGTAGATTCTTTCTGGATATTGTAGTCGGATAGTGTGCGTCCATCTTCAAGTTGT 487 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 ||||||||||| || || | |||||| || || || || |||||||| || ||||| || Sbjct 488 TTTCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATACCTTCTTTGTCTTGAATTTTG 547 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| ||||| || | || || ||||| || |||| || ||||| || |||||| Sbjct 548 GCTTTGACATTCTCAATAGTGTCCGATGGTTCAACTTCTAAAGTGATAGTTTTGCCAGTA 607 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| |||||||| Sbjct 608 AGTGTCTTGACAAAGATCTGCAT 630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147753654481604