Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq131719 143 2e-29 seq67196 82.4 6e-11 >seq131719 Length=2163 Score = 143 bits (158), Expect = 2e-29 Identities = 402/609 (66%), Gaps = 15/609 (2%) Strand=Plus/Plus Query 30231 TTACTTTGTAGAGTGGGGTGTTTACGACAGACAATATCCAGCAGACTTAGTTCCCGTCCC 30290 |||||| ||||| ||||| || || || | | || | ||| || || |||| Sbjct 1562 TTACTTCGTAGAATGGGGAGTGTATCCGAGGAAGTTCCCCGTGGACCGCGTGCCGATCCC 1621 Query 30291 CAACCTTACGCATCTTTTGTATGGCTTTGTGCCTCTCTGCGGTGGAGATGGTATAAACGA 30350 ||| || || || | ||||| || || | || ||||||| || || || || ||||| Sbjct 1622 CAATCTGACTCACTTGTTGTACGGGTTCATTCCGATCTGCGGAGGCGACGGCATCAACGA 1681 Query 30351 TAGCTTAAAGCAAGTGCCGGGTTCGTTTGAGGCTTTACAAAAATCTTGCGCGGGTCGAGA 30410 || | ||| | | ||| || |||| | || || ||| || || || Sbjct 1682 CAGTCTGAAGGAGATTGAGGGCAGTTTCCAGGCACTCCAGCGTTCCTGCAGCGGCCGCGA 1741 Query 30411 GGATTTTAAAGTGACGATTCACGATATTTGGGGCGCTCTTCAAAAACCACAAAAAGGAGT 30470 || || |||||| | ||||| || |||| ||||||||| ||||||||||| || | Sbjct 1742 AGACTTCAAAGTGTCCATTCATGACCCCTGGGCCGCTCTTCAGAAACCACAAAAGGGCCT 1801 Query 30471 GGGCGCTTGGGACGATCCGTATAAAGGAAATTTTGGCCAACTGATGGCGATTAAA-AGAC 30529 | ||| |||| || || |||||||| || |||||||||||| | | ||| || | Sbjct 1802 TTCTTCATGGAACGAACCTTACAAAGGAAACTTCGGCCAACTGATGATGTTGAAACAGGC 1861 Query 30530 ACAATCCCGACCTTACGATTTTACCGTCTATTGGCGGGTGGACACTTAGC-GACCCTTTC 30588 | || ||||| | |||||| || || | ||||| ||||| || || || || ||| Sbjct 1862 -GAGACCAGACCTCAAGATTTTGCCTTCCGTCGGCGGCTGGAC-TTTGGCTGATCCATTC 1919 Query 30589 TTTAAATTGAGTTCTGCCGA---AAATCGCGCCGTTTTCGTTGAGTCCGCACGAGAGTAT 30645 ||| || | ||| | | ||| || | | |||||||| |||| | ||| | Sbjct 1920 TTTTTCTTCA---CTGACAAGACAAAGCGTGACCGTTTCGTTGCTTCCGTAAAAGACTTC 1976 Query 30646 TTGCGCACATGGAAATTTTTTGACGGACTAGACATCGACTGGGAGTTTCCGGGCGGTAAA 30705 | | || |||||||| |||||||| | || ||||| |||||||| || || |||||| Sbjct 1977 CTCCAGACCTGGAAATTCTTTGACGGCGTCGATATCGATTGGGAGTTCCCTGGAGGTAAA 2036 Query 30706 GGTGCTAATCCCGAATTAGG-AGATCCAGAAAAGGATGGAGTAACATATGTGCAGTTATT 30764 || ||||| ||| | | || || || ||||| |||| || || || | | | Sbjct 2037 GGCGCTAACCCCAATCTCGGCAGGCCC----AAGGACGGAGAAATCTACGTACTTCTGAT 2092 Query 30765 GAAAGAGCTCAGAGAAATGCTAAACGATCTTTCTAAAGAAACAGGGAAAAAATACCAGCT 30824 ||| || || | || ||| | ||||| || || ||||| || | |||||| || | Sbjct 2093 GAAGGAACTGCGCGAGATGTTGAACGAGCTCTCGGCGGAAACTGGAAGGAAATACGAGTT 2152 Query 30825 CACCTCGGC 30833 || || || Sbjct 2153 GACGTCTGC 2161 >seq67196 Length=1848 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||||||||| | | || || | ||| | ||| || |||||||| |||||||| | Sbjct 695 ACCTCCGCGAAGTCGTAGAACAAGATGTAAAGTGGATTCTTTTTGAATATTGTAATCTGA 754 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || |||| |||| |||||| || | |||| | |||||||||||| || Sbjct 755 CAAAGTACGGCCGTCTTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGG 814 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAG-ACGCTATGGTATCGGTAGACTCCG 48677 | || ||| |||||| ||| || |||| | | | | || ||||| | || || Sbjct 815 GATACCTTCTTTGTCCTGAATCTT-AGCTTTAACGTTCTCGATAGTATCTGAAGGTTCGA 873 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || || ||||| || || | ||||||||| ||||||||||| Sbjct 874 CTTCCAAGGTGATCGTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419982778805063