Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq168888 489 2e-133 seq105002 86.0 8e-12 >seq168888 Length=4095 Score = 489 bits (542), Expect = 2e-133 Identities = 1156/1733 (67%), Gaps = 26/1733 (2%) Strand=Plus/Minus Query 61888 ATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 61947 ||| ||||| || ||||| ||||| | |||| | ||||| || || |||| ||| Sbjct 3166 ATAATACATGCCGGTTTTAAGACCCATTTTCCAAGCATAAAAGTGAATCGATGTTAATTT 3107 Query 61948 GGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCC 62007 ||| | || || |||| ||| || || | ||| |||||||| || || || || || Sbjct 3106 ACCGTAATTTGGTTCAGCTACATGAATGTTAAAAGACTGACTTTGGTCAATAAATGCACC 3047 Query 62008 CCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC 62067 ||| || |||||||||| || | || || | | ||||||| ||| ||||| | Sbjct 3046 CCTATCGGCAGCCATTTGAATTGTAGTTTTAACAGACACCTCCCAAACAGTCTTATATAG 2987 Query 62068 -TCGCTTAATATCTTCTGGAA--GGTT-TGTATTCTGAATGGATCCACCATCTGCCATAA 62123 || |||| | |||| |||| | || | |||| || || || ||| || || | Sbjct 2986 ATCTCTTATT-TCTTTCGGAATAGCTTCTATATTTTGTATTGACCCATTATTGTGTATTA 2928 Query 62124 TCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62183 | ||| || || || |||| ||| || | | || |||||| | | | | ||| Sbjct 2927 TAAGATTTTTCATGTCTTCATCCCACAAATCTGCTTCAGTTAAATCACGCAATAAATGAT 2868 Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62243 |||| || ||||| || || |||||||| ||||| | ||| ||||| || | | Sbjct 2867 GATTTACAACTTGGAACTCGCCAGACAAAACTCTTCTTTGGTATATATTTGATGTGAAAG 2808 Query 62244 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 |||| | || ||||| || || | ||||||||| || ||||| || |||||||| || | Sbjct 2807 GTTCAAATGATTCATTGTTACCAAGAATTTGAGCCGTGGATGCTGTTGGCATAGGAGCTA 2748 Query 62304 CCAATAAACTATTTCTAAGACCGTATGTTCTGA--TTTTATCTTTTAGAGGTTCCCAATT 62361 |||||| |||||| | ||| ||| | || || | ||||||| || ||||| || Sbjct 2747 ATAATAAAGAATTTCTCAAACC--ATGCTTAGAAATTCTTTCTTTTAAAGCATCCCAGTT 2690 Query 62362 CCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTA 62421 |||||| || | || ||||| ||||| | ||||| Sbjct 2689 CCAAAGGTCGGTGGGGGTTTTGCTCCACATGTCGTATTGTAATATACCTTGACTGGATGG 2630 Query 62422 CGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAA 62481 |||| | || || || || || | ||| || || ||||||||||| || |||| Sbjct 2629 GCTTCCTTCGTAAGTGTCATAAACCCCATACTTTTCTGCAAGTTCACAACTAGCTTCTAG 2570 Query 62482 TGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATC 62541 ||| ||||||||||||||||| || || | | ||| || | |||| | || || Sbjct 2569 TGCCCCGTAATAAATGGTTTCAAATATTTGTTGATTAAGTTTCATCGCTGCATCACTTTC 2510 Query 62542 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 62601 | ||| | | | | ||| | ||||||| |||||||||||||| || ||||| Sbjct 2509 ATATGCAATGCGCATCAAGACAAATGTATCTGCTAGCCCTTGAACACCAATTCCTATAGG 2450 Query 62602 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62661 ||||| ||| |||| || || || || || || ||||| |||||| ||| || || Sbjct 2449 CCTATGCCTCATATTTGATTTTCTTGCCTCCGGGATCGGATAGAAATTAACATCAATGAT 2390 Query 62662 TTTATTGAGATTTCTGAC-AATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62720 |||||| | ||| ||| ||| | |||| || || || | ||| ||||| | || Sbjct 2389 TTTATTTAAGTTT-TGAGTAATAATTTTGGTGACTTCTTTTAATTTATTAAAATTATATG 2331 Query 62721 GCCCATCT--ATTA-CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCT 62777 |||| |||| ||||||||||||| |||| |||||| | |||||| || || || | Sbjct 2330 TTTTATCTTCATTAACAAACATGTTCAAAGCAATAGATGCTAAATTACACACCGCGACTT 2271 Query 62778 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 62837 | | ||| || |||| | ||||||||||| | |||||||| || || || |||| Sbjct 2270 CGTCAGCTGACGTGTATTCAACGATCTCAGTGCATAAGTTACTACATTTTATAGTGCCTA 2211 Query 62838 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 62897 | || | ||| ||||| || ||||||| || || || ||||| || | || || || | Sbjct 2210 AGTTCTTTTGGTTACTTTTCCTGTTACAAGCGTCTTTGTAAAGCATATAGGGTGTTCCCG 2151 Query 62898 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGC-CT---TTATTATAGAT 62953 |||||| || | ||| || || |||||||| | ||| | || || | || | | Sbjct 2150 TTTCAACTTGGGCTTCGATTATGGCTTTCCATAAAACTTGGGCGCTGACCTGTTTCACA- 2092 Query 62954 TTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63013 | | ||||||| |||||||| || ||| | |||||| || ||||||||| Sbjct 2091 ---AAACGCTTTTCTTTTTCGTATTGTTCATATAGATTTTCGAATTCATCTCCCCAACAG 2035 Query 63014 TTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63073 | | | ||||||||| |||| |||||||| | ||| ||| | | | | ||| Sbjct 2034 TCAGCTAATCCAGGACAATCATGAGGACACATAAGACTCCAGTCTTCATTTTTTTCAACT 1975 Query 63074 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCC 63133 | ||||||||| ||||| || ||||| | ||| ||| | |||| | || ||| Sbjct 1974 CTTTTCATAAAAAGATCCGGTATCCATAAAGCATAAAACAACTCTCGAGCTCGTACTTCT 1915 Query 63134 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63193 || || || || |||||||| || ||||| || | | ||| || | |||||| || || Sbjct 1914 TCTTTGCCAGTGTTCTTTTTGAGGTCGAGAAATTCAAAAATGTCTGCATGCCAAGGCTCT 1855 Query 63194 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63253 || || | || | | |||| || ||||| ||||| || ||||||| ||||| || ||| Sbjct 1854 AAATACACTGCAAAAGCTCCGGGGCGTTTATTTCCACCTTGATCTACATATCTTGCTGTG 1795 Query 63254 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATA 63313 || || ||||| || | |||||| | | || || ||| |||||| || |||| |||| Sbjct 1794 TTGTTGTAAACCCTAAGCATTGGCACGAGTCCGTTAGATACACCATTTGTGCCTGCGATA 1735 Query 63314 TAGCTTCCACTGGCACGAATATTACTAATTGATAGA--CCTATTCCCCCTGCCATTTTAG 63371 || ||| | || | ||| | | | | | || || ||||| || || ||||| Sbjct 1734 TATGATCCTTTAGCTCTGATA-CAGTGAACG-TGGACTCCGATTCCACCAGCAGATTTAG 1677 Query 63372 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 63431 | || | || ||| ||||||| |||||||| || || || ||||| ||||| |||| Sbjct 1676 ATATAAGCGCACATTGTTTTAAAGTATCATATATACCTTCAATACTGTCATCTTTCATAG 1617 Query 63432 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 63491 | |||||||| |||| ||| | || || | || || | ||| || Sbjct 1616 CTACAAGAAAACAAGATGACAATTGTGGCCGTGGTGTGGCAGCTGAGAACAGGGTTGGGC 1557 Query 63492 AAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATAT 63551 ||||| ||||| |||||||||| || | |||||| || | || || | ||||||| Sbjct 1556 TGGCGTGTGTAAAATATTTTTCAGACAGCAAATTGTAAGTATTTATGGCAGCATCTATAT 1497 Query 63552 CCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 | ||| || || | | || | ||| | ||| ||||| |||| |||| Sbjct 1496 CTTCACCATGGATACCAATAGATACTCTCATCAGCATATGCTGTGGTCGTTCA 1444 >seq105002 Length=4868 Score = 86.0 bits (94), Expect = 8e-12 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873 |||| |||| | |||||||||||||| || |||| |||| || ||| |||| | || Sbjct 3815 AAAT-GTTTCTGAGTTTCTTTGTGTAGGTTGGATATAGCTAGTCGAGCAGCTAACACAGC 3757 Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 ||| || ||||| | ||||| ||| || || |||| ||||| | | | || ||||| Sbjct 3756 ATAGTCAGGATGATTAGTAGTCATAGTTGCCGCGGTTTCTGCTGCTAAATTATCTAATTC 3697 Query 63934 TACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 || |||||||||||| || || || | ||||| || Sbjct 3696 AACAGTTGTTACACCAGAGTAAATCCCATTTATAACTTT 3658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631675162214800