Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_008948.1 Length=4442 Score E Sequences producing significant alignments: (Bits) Value seq75450 630 2e-177 >seq75450 Length=3155 Score = 630 bits (698), Expect = 2e-177 Identities = 885/1228 (72%), Gaps = 42/1228 (3%) Strand=Plus/Minus Query 2987 TCGGACAGTGATTCTTCGAGTGAATCTGT-ATTGCCGCGGTTGATTTTGAAGAAAATTGG 3045 ||||||||||| || |||||||| ||| |||||||||||||| |||||||| | || Sbjct 3005 TCGGACAGTGAGTCATCGAGTGAG-CTGCCATTGCCGCGGTTGACTTTGAAGAGAGTTAC 2947 Query 3046 AAAGAACGAACCGGCAGAGTCCGAAATTGATCCGGTTCTGAGAGACTTTCAGAGTGATTC 3105 | |||| ||| |||||| ||||||||| ||||||| ||| || |||| || Sbjct 2946 ACCGAACAAACTGGCAGAAGAAAAAATTGATCAGGTTCTGGAAGAGATTAAGAGGGAGGT 2887 Query 3106 TAAAGTACAGTCAATGGATA----TTGATACTGCTTCTCAAGAAAGGAGCGAGGCAGTAG 3161 | | || ||||| | |||||||||||||| |||||||||| || ||| Sbjct 2886 TGGGG-ACG---AATGGGTGACGGTTGATACTGCTTCTGGAGAAAGGAGCA---CATTAG 2834 Query 3162 TGCCCTTCAAGAAGCGGCGTT---TTAAAGGACTACTCGTGGATGAACATTCTGTAAGAA 3218 ||||||||||||||||||||| || ||| ||| | ||||| |||||| || || Sbjct 2833 TGCCCTTCAAGAAGCGGCGTTACGTTGAAGCACTT---GCTGATGACAATTCTGAAACAA 2777 Query 3219 ACATCTCCACAGAAGAAGAGACACAAGTTTTGAAGCAGAGCATCGCTGTTGAAGAAGCGC 3278 ||||| |||| |||||||| |||||||||||||||||||||| | |||| |||||| Sbjct 2776 CCATCTGTACAGTAGAAGAGAAACAAGTTTTGAAGCAGAGCATCACCATTGAGAAAGCGC 2717 Query 3279 ACAAGTCCGAAGCCATGTCTTGCGATGAGTCAGGCATTGAGAAGGAACGCCAAGATAAGA 3338 ||||| || |||||||||||| ||||||||| | | ||| || |||| |||||| ||| Sbjct 2716 ACAAGCCCAAAGCCATGTCTTCCGATGAGTCTGACGGTGAAGAGAAACGACAAGATGAGA 2657 Query 3339 AAGAACAGCA------------GCAGCCAAAGGCAGAGTTGCCACAACCCACCAACGAAC 3386 || ||||||| ||| ||| | ||||||||||| |||| |||||||||| Sbjct 2656 AAAAACAGCAACACATGCAGCAGCAACCAGAAGCAGAGTTGCCCCAACTAACCAACGAAC 2597 Query 3387 CATCGTCGAGCCAGATGATGCATGCACCATACCGAGATGGAGCTCTCGCTGGAACATCTG 3446 |||| |||||| ||||||||||| |||| || ||||| ||||| ||||||||||||| Sbjct 2596 CATCATCGAGCTCCATGATGCATGCTCCATGCCAAGATGAAGCTCGTGCTGGAACATCTG 2537 Query 3447 GTACAGGCTTTGTTTCATCCACCCAACTCACGTCCCACCCCCAAGAATTCTGGATCAACG 3506 | | | || ||||| || || || | || | ||| ||||||||| || | Sbjct 2536 CCTCGGAGTGTGGGTCATC-ACAAAAACAACATTCC--CTCCAGGAATTCTGGCTCGGAG 2480 Query 3507 TATTGaaaaaaaaCTTCAACGAGTTAGACTCCGCCAAGAGGCTTCAAGCTACCCAGTTTA 3566 ||||| |||||||||||| || || || | | |||| || | || | || |||||| Sbjct 2479 AATTGAGAAAAAACTTCAATGAATTGGAGTACAGCAAGGTACTGCGAGATGCCGAGTTTA 2420 Query 3567 CAGAAGAACAAAATGAGATACTGGACGGAGCATTCGTTGAATTGTCTCGGAGCATGGGTC 3626 |||||||||||| ||||||||| | |||||| |||||||||||| ||| Sbjct 2419 CAGAAGAACAAAGTGAGATACTACAACAGTCATTCGCGCAATTGTCTCGGAAGATGTCGT 2360 Query 3627 AAATCGTTTTAAACAGCACTCGTTCCCTGAAAACGCACAAGTGCAAACTCTGCGAATTCT 3686 | ||| | ||||| || | |||||||||||||||||||| || |||||| |||| Sbjct 2359 ACATCAAAGCACACAGCGAGCGCTTCCTGAAAACGCACAAGTGCAGACGCTGCGAGTTCT 2300 Query 3687 CGATAGGACATCAATGCATGCCCCTGGATTTCTTCCGATATGTTCGGTTCGGCGCTGAGT 3746 ||||| |||||||||||||||||| |||||| | |||| ||||| |||||| ||||| Sbjct 2299 CGATATCACATCAATGCATGCCCCTCGATTTCATGCGATCTGTTCCATTCGGCACTGAGC 2240 Query 3747 TTATGGATGAAGCGTACTTTGCGCCAAGTGAGATAGTCGTATGCAACTGTGGCTTCGCTT 3806 |||||| |||| | | | | ||| | ||| |||||||||| ||||||| ||||| | Sbjct 2239 TTATGGCTGAAACACTCATAGTACCACATCAGACAGTCGTATGCGACTGTGGTTTCGCCT 2180 Query 3807 TCTGTCACACACATATTAAAAGATTGCGAGCCTCGGTGGTGCGAGGCATTCCGGGAAGGC 3866 ||| |||||| ||| |||||||| ||| | ||||| || || ||| ||| Sbjct 2179 TCTCTCACACCCATCTTAAAAGAACTCGACGCCCGGTGAAGCAGAGCTACGCGGAGAGGT 2120 Query 3867 TTACGTATTGCTTACGAGAATACAACCGTTCTGTCGACGTCAGTTGCGCCAAATGCTTTT 3926 ||| ||| | | ||||| ||||||||||| ||||||||| ||||||||| | Sbjct 2119 ACACGCCACACTTGCAACTATACATGCGTTCTGTCGATGTCAGTTGCCCCAAATGCTATA 2060 Query 3927 CCACCGTTGTTATGACCAATC--GATCAAAAGAAATTTGTTGCGATGTGAATACCTGGGA 3984 ||| | ||||||| || || ||| | | | | || || || || |||||||| Sbjct 2059 CCAAAATCGTTATGAACAGTCTAGATGACA--ATGTCTGCTGTGAACTGGCCACCTGGGA 2002 Query 3985 CGGTATCACCAATGCTCATCGTCAAACGTTTTACGATCATGTAAAAAGTAATCCAATCTG 4044 | |||| | | | | ||| ||| ||||||| | | ||||| | || Sbjct 2001 CTGTATTGCTGGTAATGAACGTGAAATGTTTTACACCGGTATTAAAAGATGTTTGGCCTA 1942 Query 4045 TAGACTGACTGACCGACCATCCTTGGATAACTTTTATGCTTGCAGTAAGGGTTGCTGCCT 4104 | | || ||| ||| | || ||| | || | |||||||||||||||||| || || Sbjct 1941 TTCAGGAACAGACGCGCCACCATTAGATGAGTTCTTTGCTTGCAGTAAGGGTTGTTGTCT 1882 Query 4105 CACGTATCATCATTGCTTCGGAACGGACGAGGTTCCCGG-AGCTTTGACCACATCACCCG 4163 || |||||||||||| || ||| ||| ||||||||||| | | || | ||||||||| Sbjct 1881 CATATATCATCATTGC-TCTGAA-GGATGAGGTTCCCGGCACCAGCGA-CTCATCACCCG 1825 Query 4164 GTTGAATACTTCCACCGACACCATCCCA 4191 ||||| || | || |||||||| ||| Sbjct 1824 GTTGACTATGTTCATAGACACCATTCCA 1797 Score = 410 bits (454), Expect = 3e-111 Identities = 319/376 (85%), Gaps = 7/376 (2%) Strand=Plus/Minus Query 719 GAACTGGCGAGCTCCATGCAACGTGTGCGAGCCGCACCGTCCATATAGAACGCGACGTCT 778 ||||| || |||||||| |||||||||||||||||||||||| |||||||||||||| Sbjct 1020 GAACTCGCAGTCTCCATGCGACGTGTGCGAGCCGCACCGTCCATGAAGAACGCGACGTCT 961 Query 779 AT-CCCTTCAATCTCTCCTAAGCCTCGAGCTGTGAACTTCTCAAGCGCTTCAAATCAACA 837 || |||||||| ||||| | | ||||||| ||||||| |||||| ||||||||| ||| Sbjct 960 ATTCCCTTCAAACTCTCGTTAATCTCGAGCCGTGAACTGCTCAAGAGCTTCAAATTGACA 901 Query 838 TTTGGTTAATC---TAATGAATGTTTGCACACTTCTTCCCAACACATCATTCGCAGACAC 894 || ||| |||| ||||||||||||||| |||||||||||||| | ||| | |||||| Sbjct 900 TTCGGTCAATCATCTAATGAATGTTTGCAAACTTCTTCCCAACA--TGATTGG-AGACAC 844 Query 895 GTTGCTTCCAAATGCATCCCCAACGATTCGAACGCAGAGGCTTTCCCTAAAAGTGCGCAC 954 ||||||||||||||||||| ||||| |||| ||||||||||||| |||| |||| ||||| Sbjct 843 GTTGCTTCCAAATGCATCCGCAACGCTTCGGACGCAGAGGCTTTGCCTAGAAGTCCGCAC 784 Query 955 GATGACTGACGTTCGGATATGCCTCATGGTCTATCGAACCTCTCTCCGCATGACGACGTG 1014 ||| | ||||||| |||| |||| ||| ||||||||| ||||||| ||| | |||||| Sbjct 783 GATAAATGACGTTACTATATTCCTCGTGGCCTATCGAACATCTCTCCACATCATGACGTG 724 Query 1015 TCAGGTTGGTTGCACGAATGTTCACCGTTCATGAAGAACACAAAGTTGCATCACCAGTTC 1074 |||||||| |||||| | |||||||||||||||||||||| |||||||||||| |||| Sbjct 723 TCAGGTTGCTTGCACAAGTGTTCACCGTTCATGAAGAACAGAAAGTTGCATCATTGGTTC 664 Query 1075 AACAGCGCACAGCGAT 1090 ||| | |||| ||||| Sbjct 663 AACGGTGCACGGCGAT 648 Score = 358 bits (396), Expect = 2e-95 Identities = 491/673 (73%), Gaps = 51/673 (8%) Strand=Plus/Minus Query 1304 TGTTCACCATACATGAAGAACACAATGTTGAATCATATTGGTTGAACGGTACGTGGCGAA 1363 |||||||| | ||||||||||| || |||| ||||| ||||| |||||| | ||||| Sbjct 705 TGTTCACCGTTCATGAAGAACAGAAAGTTGCATCAT--TGGTTCAACGGTGCACGGCGA- 649 Query 1364 TCGTCACGTACTACAATGAAAACTTGTTTTCCACGAAATGGTTGAACCTTA---TCGAGA 1420 ||||||||| | || || ||||| |||| | ||| ||||| ||||| | |||||| Sbjct 648 TCGTCACGTTCGACGATCAAAACACGTTTGC-ACGTAATGGCTGAACGTGTCGTTCGAGA 590 Query 1421 ACATTCGACGTTGGAAAAACACGAAGCGGATGTTATCGTCTTGCCAGAGTCAACAAGCGC 1480 |||||| | ||||| |||| | |||||||||||||| ||||| |||||| |||| Sbjct 589 ACATTCTATGTTGGCGAAACCCCTGGCGGATGTTATCGTTGTGCCAAAGTCAAGAAGCT- 531 Query 1481 CGCCCATAAATTA-AACTAGAACGACGTGGGCATATGTGTAACTGTATAC--ATTGGCCA 1537 || |||| |||| | | | |||||| ||| ||| | | |||| Sbjct 530 -----ATCAATTTGAACTTAACCAAACGGGGCATCTGTTATTCTGGACAACTATTG---- 480 Query 1538 CGTAGCTGCGTAAACAACAGCCGCATGAACTAAATGACGGAACGTGGTGATGAGAGACGC 1597 || | |||| | |||||||||||| ||||| || | | || || |||| || || | Sbjct 479 CGCAACTGCATGAACAACAGCCGCGTGAACGTGATCCCCGTACCTGTTGATAAGGGAAAC 420 Query 1598 GAGTATTCCCCTCCGATA--GCTACAGTTGCAACGAGACTT--GGA-ATATTGAGAGCTG 1652 | | || | | |||||| ||| ||||| ||||||| | | ||| |||| ||||||| Sbjct 419 GGATTTTTCACGCCGATATAGCTTCAGTTACAACGAGTCGTCGGGATATATAAAGAGCTG 360 Query 1653 CAACTCAAAACTAGTTTTTATCCGCTCGTTGACTA--------AGCGAGTGGCGCAACAC 1704 ||| |||||||||||||||||| |||||||||| | ||||||| |||| Sbjct 359 GAACACAAAACTAGTTTTTATCCACTCGTTGACTCGCTCAGTCAACGAGTGGA-CAAC-- 303 Query 1705 GGTGTGCAATTCGTGTCACAATCACCGTTCTCCGTATGCTAGCA------TGATCCCAAC 1758 || |||||||||||| || |||| | | |||| ||||| | ||||| |||| Sbjct 302 GGCAGGCAATTCGTGTCGCAGTCACTGCTG-CCGTGCGCTAGAAAACTTATGATCTCAAC 244 Query 1759 GACCTCCATTTGCATCAATGTGTTT--GTGAAGTCTTGGTTCGTGCGATACAGATAGCAA 1816 |||||| ||||| ||||| |||||| ||||| |||| |||||||||||| || ||| | Sbjct 243 GACCTCTATTTGGATCAAAGTGTTTTTGTGAATACTTGCTTCGTGCGATACGGACAGCGA 184 Query 1817 AGTAGATTATAAACCGTTTAACCAGAGCTCGCCGAGCAGTCCACTAGTTCCAGAAACCGC 1876 |||||||| |||| |||||||||| ||| | |||||||||| | |||| || Sbjct 183 AGTAGATT------CGTTCAACCAGAGCTTACCGTATGGCCCACTAGTTCGATAAACTGC 130 Query 1877 GAAAGATGAAGGAACTTTGAAGCTTTACATCTGGAACATCAACACGATTAGCACATCTGT 1936 || |||||| ||| || ||||||| |||||||||||| || | ||||||||||| || Sbjct 129 AAACGATGAAAGAATTTCCAAGCTTTGCATCTGGAACATGAAAAATATTAGCACATCCGT 70 Query 1937 TGAGAAATCTACT 1949 ||||||||||||| Sbjct 69 TGAGAAATCTACT 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14064291767565