Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq131719 300 2e-76 seq168888 159 3e-34 seq193007 93.3 4e-14 seq67196 93.3 4e-14 >seq131719 Length=2163 Score = 300 bits (332), Expect = 2e-76 Identities = 368/500 (74%), Gaps = 2/500 (0%) Strand=Plus/Plus Query 28007 GCCTATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTCCCGTCGACAAAGTGCCCGCG 28066 || || ||||| || ||||| ||||||| | || |||| ||||| ||| ||||| Sbjct 1560 GCTTACTTCGTAGAATGGGGAGTGTATCCGAGGAAGTTCCCCGTGGACCGCGTGCCGATC 1619 Query 28067 CCCAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAAC 28126 ||||| ||| | |||||| ||||||| ||| | ||||| ||||| ||||||||||| ||| Sbjct 1620 CCCAATCTGACTCACTTGTTGTACGGGTTCATTCCGATCTGCGGAGGCGACGGCATCAAC 1679 Query 28127 GACGCCCTCAAGACCGTTCCCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGC 28186 ||| || ||| || ||||||||| |||| || ||||| || ||| ||| ||| Sbjct 1680 GACAGTCTGAAGGAGATTGAGGGCAGTTTCCAGGCACTCCAGCGTTCCTGCAGCGGCCGC 1739 Query 28187 GCCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGC 28246 | |||||||| ||| | || || || ||||||||||| ||||||| || ||||||||| Sbjct 1740 GAAGACTTCAAAGTGTCCATTCATGACCCCTGGGCCGCTCTTCAGAAACCACAAAAGGGC 1799 Query 28247 GTCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATGAGCGTCAAATTA 28306 | ||| | |||||||| || |||||||| ||||| || ||| |||||| | ||| Sbjct 1800 CTTTCTTCATGGAACGAACCTTACAAAGGAAACTTCGGCCAACTGATGATGTTGAAACAG 1859 Query 28307 GCCAATCCGCACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACGCTGTCGGACCCATTC 28366 || | || || | ||| | || | || ||||||||||||| || | || |||||| Sbjct 1860 GCGAGACCAGACCTCAAGATTTTGCCTTCCGTCGGCGGCTGGACTTTGGCTGATCCATTC 1919 Query 28367 TTTCACATGCAC-GACGCGACCGTGCGCCAAACGTTCATCGATTCCGTCGTGGACTTTCT 28425 ||| | | ||| ||| ||| ||| | ||| | | |||||| ||||| || Sbjct 1920 TTTTTC-TTCACTGACAAGACAAAGCGTGACCGTTTCGTTGCTTCCGTAAAAGACTTCCT 1978 Query 28426 GCTGACCTGGAAGTTCTTCGACGGCGTCGACATCGATTGGGAGTTTCCGGGCGGCAAAGG 28485 | ||||||||| ||||| ||||||||||| |||||||||||||| || || || ||||| Sbjct 1979 CCAGACCTGGAAATTCTTTGACGGCGTCGATATCGATTGGGAGTTCCCTGGAGGTAAAGG 2038 Query 28486 AGCCAATCCCGATGTCGGCA 28505 || || ||| || |||||| Sbjct 2039 CGCTAACCCCAATCTCGGCA 2058 >seq168888 Length=4095 Score = 159 bits (176), Expect = 3e-34 Identities = 700/1090 (64%), Gaps = 21/1090 (2%) Strand=Plus/Minus Query 152685 TCAACGGTAAACTGTTGTGTGTGCGCCGCAGGCTTTGTGCGCAAATAATACATGCCCGTT 152744 ||||| ||||||||| | | || || |||||||| | ||||||||||||||| ||| Sbjct 3210 TCAACTGTAAACTGTATAGCATTAGCAGCTGGCTTTGTTCTCAAATAATACATGCCGGTT 3151 Query 152745 TTGAGGCCGCAGCGCCACGAGTAATTGTGAATCGAAGTCATCACAGCGTACGTCGGTTGC 152804 || || || ||| | ||| ||||||||| || | | |||| | |||| Sbjct 3150 TTAAGACCCATTTTCCAAGCATAAAAGTGAATCGATGTTAATTTACCGTAATTTGGTTCA 3091 Query 152805 GCCACGAACAGATTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATC 152864 || || | ||||| || || || || || || || || | ||||| ||||| Sbjct 3090 GCTACATGAATGTTAAAAGACTGACTTTGGTCAATAAATGCACCCCTATCGGCAGCCATT 3031 Query 152865 TCAATCATGCGTTTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTT-TTAACGCTATC 152923 | ||| | ||| | || |||||| | || || || | || | ||| || || Sbjct 3030 TGAATTGTAGTTTTAACAGACACCTCCCAAACAGTCTTATATAGATCTCTTATTTCTTTC 2971 Query 152924 CGGTATACCTTCAATGTTCTGAATAGAGCCCTTGT-GTGCAAAAATAGCGTTT-CGTAT- 152980 || ||| |||| || || || || || || || | ||| | | || ||| | | | Sbjct 2970 -GGAATAGCTTCTATATTTTGTATTGACCCATTATTGTGTATTATAAGATTTTTCATGTC 2912 Query 152981 TTCGGGCGTGTACACG--TTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACT 153038 ||| | | | ||||||| ||| | | || || | || || || ||| Sbjct 2911 TTCATCCCACAAATCTGCTTCAGTTAAATCACGCAATAAATGA-----TGATTTACAACT 2857 Query 153039 TGAAACTCGCCCGCCAACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGAT 153098 || |||||||| | ||| |||| ||| |||| ||| |||||||||||||| ||| Sbjct 2856 TGGAACTCGCCAGACAAAACTCTTCTTTGGTATATATTTGATGTGAAAGGTTCAAATGAT 2797 Query 153099 TCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAA 153158 || || || || || ||||||||||||| ||| || ||||| || | || |||||| Sbjct 2796 TCATTGTTACCAAGAATTTGAGCCGTGGATGCTGTTGGCATAGGAGCTAATAATAAAGAA 2737 Query 153159 TTCCGCAAGCCGTGCGCTCGAATGTC-GTCCTTCAACGCCTGCCAATCCCACAGCGCCGA 153217 || | ||| || ||| | ||| || || || || || | ||| | ||| || | | Sbjct 2736 TTTCTCAAACCATGC-TTAGAAATTCTTTCTTTTAAAGCATCCCAGTTCCAAAGGTCGGT 2678 Query 153218 CGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAA 153277 || || | ||||||||||||| ||||| | ||| |||||| || || || | | Sbjct 2677 GGGGGTTTTGCTCCACATGTCGTATTGTAATATACCTTGACTGGATGGGCTTCCTTCGTA 2618 Query 153278 CGTACTGTAGCTGCCGTCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTA 153337 || || || | || || ||||| || ||||| || || || || || || Sbjct 2617 AGTGTCATAAACCCCATACTTTTCTGCAAGTTCACAACTAGCTTCTAGTGCCCCGTAATA 2558 Query 153338 TATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCG 153397 |||||||| ||||||| ||| || |||| | || || || || | ||||| Sbjct 2557 AATGGTTTCAAATATTTGTTGATTAAGTTTCATCGCTGCATCACTTTCATATGCAATGCG 2498 Query 153398 CAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTC-T 153456 || || ||||| | || || || || || | ||| | || || || | |||| || | Sbjct 2497 CATCAAGACAAATGTATCTGCTAGCCCTTGAACACCAATTCCTATAGGCCTATGCCTCAT 2438 Query 153457 CGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGT 153516 ||| | || || || || |||||| ||| ||| || ||||| || | || Sbjct 2437 ATTTGAT-TTTCTTGCCTCCGGGATCGGATAGAAATTAACATCAATGATTTTATTTAAGT 2379 Query 153517 TGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATAGGTCATTTCGTCGA 153576 | | | | ||| || | | || | ||| | |||| ||| || | || || | Sbjct 2378 TTTGAGTAATAATTTTGGTGACTTCTTTTAATTTATTAAAATTATATGTTTTATCTTC-A 2320 Query 153577 CGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGC-G 153635 | ||| |||| |||||||| || | |||||| || || || || || | Sbjct 2319 TTAACAAACAT--GTTCAAAGCAATAGATGCTAAATTACACACCGCGACTTCGTCAGCTG 2262 Query 153636 TCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGC 153695 || |||| | |||||||| | ||| | ||| || |||||||| ||| || || | Sbjct 2261 ACG-TGTATTCAACGATCTCAGTGCATAAGTTACTACATTTTATAGTGCCTAAGTTCTTT 2203 Query 153696 TGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACT 153755 || || ||||| | || || ||||||||| | ||||| || ||| || || || ||| Sbjct 2202 TGGTTACTTTTCCTGTTACAAGCGTCTTTGTAAAGCATATAGGGTGTTCCCGTTTCAACT 2143 Query 153756 TGCGTTTCGA 153765 || | ||||| Sbjct 2142 TGGGCTTCGA 2133 >seq193007 Length=659 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--TCCTCGAGTTGTTTACCGG 138478 || || || || || ||||||||| ||||| ||| || || |||||||| || | Sbjct 437 GATTCTTTCTGGATATTGTAGTCGG--ATAGTGTGCGTCCATCTTCAAGTTGTTTTCCAG 494 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | |||| |||||||||||||| || || |||||||||||||| ||| |||| | ||| Sbjct 495 CAAAGATAAGACGCTGTTGGTCTGGGGGAATACCTTCTTTGTC-TTGAATTTTGGCTTTG 553 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | || | ||||| | | || || || | || | ||||| ||||| || || Sbjct 554 ACATTCTCAATAGTGTCCGATGGTTCAACTTCTAAAGTGATAGTTTTGCCAGTAAGTGTC 613 Query 138598 TTTACAAAAATCTGCATG 138615 || ||||| ||||||||| Sbjct 614 TTGACAAAGATCTGCATG 631 >seq67196 Length=1848 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| | ||| | | | || || ||||| || || ||||| Sbjct 240 CCACCACGGAGACGCAAAACCAGATGAAGGGTGGATTCTTTTTGGATATTATAGTCAGAT 299 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || ||||| || | | |||| ||||| ||||| || || || Sbjct 300 AGGGTGCGGCCATCTTCAAGCTGTTTTCCAGCAAAGATCAGACGTTGTTGATCTGGCGGA 359 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| || || ||| | || | ||| | | ||| | |||||| | | ||| || Sbjct 360 ATACCTTCCTTATCC-TGAATCTTGGCTTTGACATTTTCAATGGTGTCAGATGGCTCAAC 418 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | ||||||||||||| ||||| ||||| |||||||| Sbjct 419 TTCTAGAGTGATAGTTTTACCAGTCAAGGTTTTAACAAAGATCTGCAT 466 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTC 138464 ||| | ||||| | || || |||||||| ||||| || || |||||| ||| || Sbjct 713 AACAAGATGTAAAGTGGATTCTTTTTGAATATTGTAATCTGACAAAGTACGGCCGTCTTC 772 Query 138465 GAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGT 138524 | || || || | | | || |||||||| || || || || |||||||||||||| | Sbjct 773 CAACTGCTTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTGTC-CT 831 Query 138525 GATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 || | || | ||||| | || | || || | | || || || | || | ||||| Sbjct 832 GAATCTTAGCTTTAACGTTCTCGATAGTATCTGAAGGTTCGACTTCCAAGGTGATCGTTT 891 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||||| |||||| || ||||||||||| Sbjct 892 TTCCAGTCAAAGTTTTCACGAAAATCTGCAT 922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494729799033360