Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22]
247,063 sequences; 314,170,746 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq131720 140 2e-28
seq67196 118 7e-22
seq193007 87.8 1e-12
>seq131720
Length=1042
Score = 140 bits (154), Expect = 2e-28
Identities = 388/594 (65%), Gaps = 16/594 (3%)
Strand=Plus/Minus
Query 5815 TATTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCC 5874
||||||| | ||| ||||||| ||||| || | ||||| ||||||||||| |||||||
Sbjct 686 TATTGCCGAGACCCATGTTCATAGCATTCAATATGTCACCATTGTCCGCGTCAATTTCCC 627
Query 5875 ACGCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATT 5934
|||| || ||||||||||| || || | || || || ||||| ||| || |||
Sbjct 626 ACGCGAACAAACCACCCAATTTGTTATTTCTGACGTATTTGCCTTTCTCTATAACTGATC 567
Query 5935 GATCGTTGTCGTACGTAACTAAATC------ATTATTATCGTAGACGTACGGAGATTGTG 5988
| | ||||||||| | || ||| || | | ||||| || | |||||
Sbjct 566 TGGCATCGTCGTACGTTATTAGATCTCCGGTGGCCTTCCTGAACACGTATGGCGCTTGTG 507
Query 5989 CAATGTTATCATAGAATTGTACAC---TTTCGTCGTACCT-----ATTTACAATATCTTT 6040
| | ||||||| ||| |||| | |||| | | || || | | || ||| |
Sbjct 506 CCACCTTATCAT--AATGGTACTCCCATTTCCCAGCAGCTATATCATCTGCTATTTCTCT 449
Query 6041 ATAATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAA 6100
|| || | || || || ||| ||||||||||| ||| | | || | || || ||
Sbjct 448 GTAGTCCACCACACCATCTTGCCAAGTACCTTTAACAGGACCCGTTGCATTGCCAGTGAA 389
Query 6101 CGGATTATTGTTTTCGACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACC 6160
||||| | ||| | || |||||| ||||||| ||||| ||||| || |||||
Sbjct 388 AGGATTGTCACCTTCATAACCGTGGACACCGGTCCAGCCACGTCCGTACATGGCAACACC 329
Query 6161 TACTACTAATTTAGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGT 6220
|| || | || | | || ||| ||| ||||| || | | |||| ||
Sbjct 328 AACCACAATCTTCTTAGGATTCACACCTTGCGCCAACAAGTATTTCACGCCGAAATCAGT 269
Query 6221 TGTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATT 6280
|||||| | || || | ||| || |||||||| || | | || ||| | | |
Sbjct 268 CGTGTAAGTCTCCTTCGGCTGCCAAGATGGAGCGTACAGAGAAGCCTGGTGACCAAGAGT 209
Query 6281 TTCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCG 6340
|| ||||||| || || || ||||||||| |||| | ||||| | || | ||
Sbjct 208 ATCATTGGACCACGCTCCCTTGAAATCGTAGCTCATGAAGAATATGTGGTCCATGTATTT 149
Query 6341 TTGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGC 6394
||||| | | |||||||| || | ||| ||||| |||| |||| ||| ||
Sbjct 148 CTGCGCTGCGCTGTAATCGACGACTTGGATCTTGTCCCAACCAGCACTGATGGC 95
>seq67196
Length=1848
Score = 118 bits (130), Expect = 7e-22
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|| || || | ||| |||||| ||||||||| ||||| ||||| | |||| || |
Sbjct 708 CGTAGAACAAGATGTAAAGTGGATTCTTTTTGAATATTGTAATCTGACAAAGTACGGCCG 767
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| ||||| || || || ||||||| | |||||||||||| | ||| | |||||||||
Sbjct 768 TCTTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTG 827
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| || || ||||| || | | || |||| ||| || ||||| || ||
Sbjct 828 TCCTGAATCTTAGCTTTAACGTTCTCGATAGTATCTGAAGGTTCGACTTCCAAGGTGATC 887
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||||| || || |||||||| ||||| ||||||||
Sbjct 888 GTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 922
>seq193007
Length=659
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
|| || ||||| ||||| || |||||| || ||||| || |||| | |||| ||
Sbjct 416 CGGAGAACCAAGTGCAATGTAGATTCTTTCTGGATATTGTAGTCGGATAGTGTGCGTCCA 475
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || | |||||| || |||| || | |||||| || || | ||| | |||||||||
Sbjct 476 TCTTCAAGTTGTTTTCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATACCTTCTTTG 535
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| ||||| ||| | || | | ||||| | ||| || || ||||| ||
Sbjct 536 TCTTGAATTTTGGCTTTGACATTCTCAATAGTGTCCGATGGTTCAACTTCTAAAGTGATA 595
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| || || | || || || ||||||||||||
Sbjct 596 GTTTTGCCAGTAAGTGTCTTGACAAAGATCTGCATG 631
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346323642236279
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |