Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chilo_20suppressalis_20[genbank_20GCA_5F000636095.1_202014-04-22] 247,063 sequences; 314,170,746 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq131720 140 2e-28 seq67196 118 7e-22 seq193007 87.8 1e-12 >seq131720 Length=1042 Score = 140 bits (154), Expect = 2e-28 Identities = 388/594 (65%), Gaps = 16/594 (3%) Strand=Plus/Minus Query 5815 TATTGCCCAAACCGGTGTTCATTGCATTTAAAAGATCACCGTTGTCCGCGTCTATTTCCC 5874 ||||||| | ||| ||||||| ||||| || | ||||| ||||||||||| ||||||| Sbjct 686 TATTGCCGAGACCCATGTTCATAGCATTCAATATGTCACCATTGTCCGCGTCAATTTCCC 627 Query 5875 ACGCAAATAAACCACCCAAATTTTTGCTCACTACATACTTACCTTTTGCTACCACCGATT 5934 |||| || ||||||||||| || || | || || || ||||| ||| || ||| Sbjct 626 ACGCGAACAAACCACCCAATTTGTTATTTCTGACGTATTTGCCTTTCTCTATAACTGATC 567 Query 5935 GATCGTTGTCGTACGTAACTAAATC------ATTATTATCGTAGACGTACGGAGATTGTG 5988 | | ||||||||| | || ||| || | | ||||| || | ||||| Sbjct 566 TGGCATCGTCGTACGTTATTAGATCTCCGGTGGCCTTCCTGAACACGTATGGCGCTTGTG 507 Query 5989 CAATGTTATCATAGAATTGTACAC---TTTCGTCGTACCT-----ATTTACAATATCTTT 6040 | | ||||||| ||| |||| | |||| | | || || | | || ||| | Sbjct 506 CCACCTTATCAT--AATGGTACTCCCATTTCCCAGCAGCTATATCATCTGCTATTTCTCT 449 Query 6041 ATAATCGATTACGCCGCTTTCCCATGTACCTTTAACGGGAGCGCTAGCTATTCCTGTAAA 6100 || || | || || || ||| ||||||||||| ||| | | || | || || || Sbjct 448 GTAGTCCACCACACCATCTTGCCAAGTACCTTTAACAGGACCCGTTGCATTGCCAGTGAA 389 Query 6101 CGGATTATTGTTTTCGACTCGATGCACACCGCTCCAGCCGCGTCCATACATAGCCACACC 6160 ||||| | ||| | || |||||| ||||||| ||||| ||||| || ||||| Sbjct 388 AGGATTGTCACCTTCATAACCGTGGACACCGGTCCAGCCACGTCCGTACATGGCAACACC 329 Query 6161 TACTACTAATTTAGTCGAATCGACATTTTGATTTAACAATCTGTTAATAGCAAAATGGGT 6220 || || | || | | || ||| ||| ||||| || | | |||| || Sbjct 328 AACCACAATCTTCTTAGGATTCACACCTTGCGCCAACAAGTATTTCACGCCGAAATCAGT 269 Query 6221 TGTGTAATTTTCGTTAACGTCCCACGAAGGAGCGTAAAGCGGTGTTTGAAAACCCAAATT 6280 |||||| | || || | ||| || |||||||| || | | || ||| | | | Sbjct 268 CGTGTAAGTCTCCTTCGGCTGCCAAGATGGAGCGTACAGAGAAGCCTGGTGACCAAGAGT 209 Query 6281 TTCCATGGACCAAGCGCCTTTAAAATCGTAGGTCATTACAAATATATAATCGAGATAGCG 6340 || ||||||| || || || ||||||||| |||| | ||||| | || | || Sbjct 208 ATCATTGGACCACGCTCCCTTGAAATCGTAGCTCATGAAGAATATGTGGTCCATGTATTT 149 Query 6341 TTGCGCGTCTGTATAATCGACAACGTCGATTTTGTCGTAACCGGCACCGATAGC 6394 ||||| | | |||||||| || | ||| ||||| |||| |||| ||| || Sbjct 148 CTGCGCTGCGCTGTAATCGACGACTTGGATCTTGTCCCAACCAGCACTGATGGC 95 >seq67196 Length=1848 Score = 118 bits (130), Expect = 7e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || || | ||| |||||| ||||||||| ||||| ||||| | |||| || | Sbjct 708 CGTAGAACAAGATGTAAAGTGGATTCTTTTTGAATATTGTAATCTGACAAAGTACGGCCG 767 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || ||||| || || || ||||||| | |||||||||||| | ||| | ||||||||| Sbjct 768 TCTTCCAACTGCTTTCCAGCAAAAATCAGACGCTGCTGATCTGGGGGGATACCTTCTTTG 827 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || || || ||||| || | | || |||| ||| || ||||| || || Sbjct 828 TCCTGAATCTTAGCTTTAACGTTCTCGATAGTATCTGAAGGTTCGACTTCCAAGGTGATC 887 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| ||||| |||||||| Sbjct 888 GTTTTTCCAGTCAAAGTTTTCACGAAAATCTGCAT 922 >seq193007 Length=659 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| ||||| || |||||| || ||||| || |||| | |||| || Sbjct 416 CGGAGAACCAAGTGCAATGTAGATTCTTTCTGGATATTGTAGTCGGATAGTGTGCGTCCA 475 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | |||||| || |||| || | |||||| || || | ||| | ||||||||| Sbjct 476 TCTTCAAGTTGTTTTCCAGCAAAGATAAGACGCTGTTGGTCTGGGGGAATACCTTCTTTG 535 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | || | | ||||| | ||| || || ||||| || Sbjct 536 TCTTGAATTTTGGCTTTGACATTCTCAATAGTGTCCGATGGTTCAACTTCTAAAGTGATA 595 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || | || || || |||||||||||| Sbjct 596 GTTTTGCCAGTAAGTGTCTTGACAAAGATCTGCATG 631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346323642236279